| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g021190.1 |
| Family | GT5 |
| Protein Properties | Length: 507 Molecular Weight: 57291.1 Isoelectric Point: 5.8909 |
| Chromosome | Chromosome/Scaffold: 1 Start: 24668155 End: 24674351 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 31 | 499 | 0 |
| RGLGDVAGALPKALARRGHRVMVVVPKYGDYEEPQEIGEPRSYLVAGQDMEVKYYHAYIDGVDFVFIDNPVFHYVQSEIYGGNRTDIWKRMVLLCKAAVE VQWYVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMPYARSVLVIHNIAHQGRGPIDDFSYLDLPGHYMDQCKLYDPFGGDHLNIFAAGIRAA DRLLTVSHGYAWELKTPDGGWGLHSIINENDWKFQGIVNGIDTTDWNPRHDVHLQADGYTNYSLETVQTGKAQCKEALQKELGLPVRADVPVIAFIGRLD HQKGVDLIAEAMPWIAGQDVQLILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLR DTVAHYNPYEEVGVGWTFEKAEANRMIDALGHCLNTFRNYRSSWEGIQRRGMMQDLSWDNAAKLYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 507 Download |
| MEEAQLYGKH YNSYCCLILD DVASLAIMQS RGLGDVAGAL PKALARRGHR VMVVVPKYGD 60 YEEPQEIGEP RSYLVAGQDM EVKYYHAYID GVDFVFIDNP VFHYVQSEIY GGNRTDIWKR 120 MVLLCKAAVE VQWYVPCGGF CYGDGNLVFI ANDWHTALLP VYLKAYYRDN GFMPYARSVL 180 VIHNIAHQGR GPIDDFSYLD LPGHYMDQCK LYDPFGGDHL NIFAAGIRAA DRLLTVSHGY 240 AWELKTPDGG WGLHSIINEN DWKFQGIVNG IDTTDWNPRH DVHLQADGYT NYSLETVQTG 300 KAQCKEALQK ELGLPVRADV PVIAFIGRLD HQKGVDLIAE AMPWIAGQDV QLILLGTGRQ 360 DLEDTLRRLE SQHYDRVRGW VGFSVRLAHR MTAGADILLM PSRFEPCGLN QLYAMMYGTV 420 PVVHAVGGLR DTVAHYNPYE EVGVGWTFEK AEANRMIDAL GHCLNTFRNY RSSWEGIQRR 480 GMMQDLSWDN AAKLYEEVLL AAKYQW* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-80 | 27 | 503 | 505 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 6.0e-127 | 32 | 497 | 477 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 4.0e-158 | 32 | 499 | 483 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 32 | 502 | 475 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 32 | 499 | 477 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABY27640.1 | 0 | 29 | 506 | 288 | 765 | starch synthase IIc precursor [Sorghum bicolor] |
| GenBank | EEC67024.1 | 0 | 18 | 506 | 255 | 743 | hypothetical protein OsI_33746 [Oryza sativa Indica Group] |
| GenBank | EEE51014.1 | 0 | 18 | 506 | 275 | 763 | hypothetical protein OsJ_31644 [Oryza sativa Japonica Group] |
| RefSeq | NP_001108120.1 | 0 | 29 | 506 | 298 | 775 | starch synthase IIc precursor [Zea mays] |
| RefSeq | XP_002467190.1 | 0 | 1 | 506 | 1 | 506 | hypothetical protein SORBIDRAFT_01g021190 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 41 | 500 | 36 | 509 | X Chain X, Crystal Structure Of The Novel Alpha-Amylase Amyc From Thermotoga Maritima |
| PDB | 3vue_A | 0 | 41 | 500 | 36 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 1rzv_B | 0 | 27 | 495 | 13 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 27 | 495 | 13 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 27 | 495 | 13 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO781048 | 392 | 116 | 507 | 0 |
| HO777841 | 312 | 196 | 507 | 0 |
| HO777841 | 169 | 29 | 197 | 0 |
| HO445868 | 437 | 71 | 507 | 0 |
| HO781048 | 43 | 77 | 119 | 4.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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