| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g022290.1 |
| Family | CE8 |
| Protein Properties | Length: 382 Molecular Weight: 42358.4 Isoelectric Point: 8.4781 |
| Chromosome | Chromosome/Scaffold: 1 Start: 27497109 End: 27499952 |
| Description | pectin methylesterase 31 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 79 | 361 | 0 |
| ECFPTVQAAVDAVPLGNRARVVIRLAPGVYREPVYVAKTKNFITIAGASPEATVVSWDNTATRIKHSQSSRVIGTGTFGCGTFIVEGEDFIAENITFENS APQGSGQAVALRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGHCDFIFGNSIALMEHCHIHCKAAGFITAHSRKSTSESTGYVFLRCTITGNGD GGYMFLGRPWGPFGRVVFAYTFMDRCIKPSGWHNWDKSENERTACFYEYRCSGPGSQPSNRVTWCRQLLDVEAEQFLAHTFID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 382 Download |
| MPYPAGFLFS FPRWSTRLQH LPACLPVTPT TRAKPKQPSS STDPPARPFP IACQIAMAQQ 60 QQVVRRVLKV APPGKGDGEC FPTVQAAVDA VPLGNRARVV IRLAPGVYRE PVYVAKTKNF 120 ITIAGASPEA TVVSWDNTAT RIKHSQSSRV IGTGTFGCGT FIVEGEDFIA ENITFENSAP 180 QGSGQAVALR VTADRCAFYN CRFLGWQDTL YLHYGKQYLR DCYIEGHCDF IFGNSIALME 240 HCHIHCKAAG FITAHSRKST SESTGYVFLR CTITGNGDGG YMFLGRPWGP FGRVVFAYTF 300 MDRCIKPSGW HNWDKSENER TACFYEYRCS GPGSQPSNRV TWCRQLLDVE AEQFLAHTFI 360 DPDVDRPWLL QMMAIRVPAS A* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01095 | Pectinesterase | 1.0e-84 | 70 | 363 | 308 | + Pectinesterase. | ||
| PLN02432 | PLN02432 | 4.0e-89 | 68 | 361 | 296 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-90 | 68 | 370 | 311 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 7.0e-104 | 73 | 361 | 296 | + pectinesterase family protein | ||
| PLN02773 | PLN02773 | 0 | 68 | 381 | 314 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY78435.1 | 0 | 57 | 381 | 1 | 336 | hypothetical protein OsI_33526 [Oryza sativa Indica Group] |
| RefSeq | NP_001064567.1 | 0 | 57 | 381 | 1 | 336 | Os10g0407000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151351.1 | 0 | 60 | 381 | 3 | 324 | pectinesterase-1 [Zea mays] |
| RefSeq | XP_002283941.1 | 0 | 66 | 381 | 4 | 316 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002464636.1 | 0 | 1 | 381 | 1 | 381 | hypothetical protein SORBIDRAFT_01g022290 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 70 | 360 | 11 | 302 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 7.9874e-44 | 70 | 342 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 7e-26 | 70 | 354 | 7 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 7e-26 | 70 | 354 | 7 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 7e-26 | 70 | 354 | 7 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV024939 | 293 | 21 | 313 | 0 |
| DR793150 | 284 | 21 | 304 | 0 |
| DV032205 | 287 | 21 | 307 | 0 |
| GR994392 | 304 | 68 | 371 | 0 |
| EE037233 | 272 | 21 | 292 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
