| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g028700.1 |
| Family | GH14 |
| Protein Properties | Length: 558 Molecular Weight: 60393.2 Isoelectric Point: 6.6255 |
| Chromosome | Chromosome/Scaffold: 1 Start: 50104773 End: 50107537 |
| Description | chloroplast beta-amylase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 95 | 506 | 0 |
| YVMLPLDTVGPGGQLSRQRAVAASLMALRGAGVEGVMVDVWWGVVERDGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEE MSSNPDIVYTDRSGRRNPEYISLGCDSLPVLKGRTPIQVYTDYMRSFRERFRDYLGNVIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEFQCYDKYMR ASLEAAAVAAGHEEWGRGGPHDAGEYKQMPDDTGFFRRDGTWSTEYGHFFLEWYSGMLLEHGDRVLAAAEAVFGGTGATLSAKVAGIHWHYRTRSHAAEL TAGYYNTRDRDGYMPIARMLAKRGAVLNFTCMEMKDEQQPQHASCSPELLVQQVKAAASKAGVELAGENALERYDEAAFSQVTSTARGAGLAAFTYLRMN KTLFDGDNWRQF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 558 Download |
| MALTLRSSTS FLSPLDPTSK LLHKPADEAP PCCVAMPPAP PSRRPRALRA SVAAAAAAAH 60 SPAAATDRAP AEELLHGGGG AGQQHGLPRG GVPVYVMLPL DTVGPGGQLS RQRAVAASLM 120 ALRGAGVEGV MVDVWWGVVE RDGPGRYDWE AYAELVRMVE RAGLRLQAVM SFHQCGGNVG 180 DTCNIPLPPW VLEEMSSNPD IVYTDRSGRR NPEYISLGCD SLPVLKGRTP IQVYTDYMRS 240 FRERFRDYLG NVIAEIQVGM GPCGELRYPS YPEANGTWRF PGIGEFQCYD KYMRASLEAA 300 AVAAGHEEWG RGGPHDAGEY KQMPDDTGFF RRDGTWSTEY GHFFLEWYSG MLLEHGDRVL 360 AAAEAVFGGT GATLSAKVAG IHWHYRTRSH AAELTAGYYN TRDRDGYMPI ARMLAKRGAV 420 LNFTCMEMKD EQQPQHASCS PELLVQQVKA AASKAGVELA GENALERYDE AAFSQVTSTA 480 RGAGLAAFTY LRMNKTLFDG DNWRQFVSFV RAMADGGARP ALPRCDTGHS DLYVGFVDAS 540 KQRKAPDAES ATAAAAV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02803 | PLN02803 | 0.001 | 1 | 28 | 28 | + beta-amylase | ||
| pfam01373 | Glyco_hydro_14 | 7.0e-168 | 95 | 509 | 426 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02803 | PLN02803 | 0 | 92 | 539 | 451 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 92 | 516 | 434 | + beta-amylase; Provisional | ||
| PLN02801 | PLN02801 | 0 | 92 | 513 | 433 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF27255.2 | 0 | 1 | 538 | 1 | 506 | Os10g0565200 [Oryza sativa Japonica Group] |
| EMBL | CAN62440.1 | 0 | 1 | 557 | 1 | 543 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_001065418.1 | 0 | 1 | 538 | 1 | 528 | Os10g0565200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002282871.1 | 0 | 1 | 557 | 1 | 543 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002464915.1 | 0 | 1 | 557 | 1 | 557 | hypothetical protein SORBIDRAFT_01g028700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 92 | 513 | 12 | 441 | A Chain A, Peanut Peroxidase |
| PDB | 1q6c_A | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1ukp_D | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BU103692 | 453 | 92 | 544 | 0 |
| HO794833 | 417 | 130 | 543 | 0 |
| HO825836 | 382 | 166 | 544 | 0 |
| HO781538 | 348 | 92 | 439 | 0 |
| BU103692 | 28 | 1 | 28 | 0.000004 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
