| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g031110.1 |
| Family | AA3 |
| Protein Properties | Length: 583 Molecular Weight: 63420 Isoelectric Point: 8.1524 |
| Chromosome | Chromosome/Scaffold: 1 Start: 53664899 End: 53666862 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 44 | 581 | 0 |
| APLVSQYNYIVIGGGTAGCPLAATLSEHSRVLLLERGGLPYRNMSNQQHFTEALADTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRASNDYVR AAGWDTRLVNSSYHWVERALVFRPDVPPWQAALRDALLEAGVTPDNGFTFDHVPGTKIGGTIFDSSGQRHTAADFLRHARPRGLTVFLYATVSRILFRQQ EGVPYPVAYGVVFTDPLGVQHRVYLRDGGKNEVILSAGTLGSPQLLMLSGVGPQAHLEAHGIQVLVDQPMVGQGVADNPMNSVFIPSPVPVTLSLVQVVG ITRFGSFIEGVSGSEFGIPVSDGARRLARNFGLFSPQTGQLGTLPPKQRTPEALERAAEAMRRLDRRAFRGGFILEKILGPVSSGHIELRSADPRANPAV TFNYFQESEDLERCVHGIQTIERVIQSRAFANFTYANASVESIFTDSANFPVNLLPRHVNDSRTPEQYCRDTVMTIWHYHGGCQVGAVVDDDYRVFGVQR LRVIDSSTFKYSPGTNPQATVMMLGRYMGVKIQAQRWR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 583 Download |
| MAPGLASSAA LGVLAIVLGS SCLVALSEDE PLENLRFVRH AQDAPLVSQY NYIVIGGGTA 60 GCPLAATLSE HSRVLLLERG GLPYRNMSNQ QHFTEALADT SPASPAQRFI SEDGVVNARA 120 RVLGGGSCLN AGFYTRASND YVRAAGWDTR LVNSSYHWVE RALVFRPDVP PWQAALRDAL 180 LEAGVTPDNG FTFDHVPGTK IGGTIFDSSG QRHTAADFLR HARPRGLTVF LYATVSRILF 240 RQQEGVPYPV AYGVVFTDPL GVQHRVYLRD GGKNEVILSA GTLGSPQLLM LSGVGPQAHL 300 EAHGIQVLVD QPMVGQGVAD NPMNSVFIPS PVPVTLSLVQ VVGITRFGSF IEGVSGSEFG 360 IPVSDGARRL ARNFGLFSPQ TGQLGTLPPK QRTPEALERA AEAMRRLDRR AFRGGFILEK 420 ILGPVSSGHI ELRSADPRAN PAVTFNYFQE SEDLERCVHG IQTIERVIQS RAFANFTYAN 480 ASVESIFTDS ANFPVNLLPR HVNDSRTPEQ YCRDTVMTIW HYHGGCQVGA VVDDDYRVFG 540 VQRLRVIDSS TFKYSPGTNP QATVMMLGRY MGVKIQAQRW RK* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 5.0e-16 | 424 | 568 | 152 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 8.0e-30 | 53 | 568 | 567 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| PRK02106 | PRK02106 | 3.0e-32 | 49 | 320 | 324 | + choline dehydrogenase; Validated | ||
| COG2303 | BetA | 9.0e-45 | 49 | 569 | 577 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 48 | 579 | 535 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF65820.1 | 0 | 34 | 582 | 40 | 589 | AF251031_1 putative mandelonitrile lyase [Oryza sativa] |
| GenBank | ACN28873.1 | 0 | 87 | 582 | 1 | 496 | unknown [Zea mays] |
| GenBank | EAY79265.1 | 0 | 34 | 582 | 40 | 588 | hypothetical protein OsI_34381 [Oryza sativa Indica Group] |
| RefSeq | NP_001065107.1 | 0 | 28 | 582 | 32 | 586 | Os10g0524500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002467623.1 | 0 | 1 | 582 | 1 | 582 | hypothetical protein SORBIDRAFT_01g031110 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3red_L | 0 | 24 | 579 | 1 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_K | 0 | 24 | 579 | 1 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_J | 0 | 24 | 579 | 1 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_I | 0 | 24 | 579 | 1 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_H | 0 | 24 | 579 | 1 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
