y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb01g033140.1 |
Family | CE8 |
Protein Properties | Length: 597 Molecular Weight: 64328.6 Isoelectric Point: 5.7655 |
Chromosome | Chromosome/Scaffold: 1 Start: 56259755 End: 56261685 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 274 | 575 | 0 |
NVTVAKDGSGDFANISAALDAMPEKYTGRYFIYVKEGVYDEMVNITGRMANVTMYGDGSKRSVVTGNKNIVDGVRMWRTATFAVDGDSFMAMKLGIKNTA GVEKQQALALRVKGDKAIFFNCRIEGNQDTLFAQAYRQFYRSCVISGTVDFIMGDAAAVFQRCLLVVRQPRQGQPAVVTAQSRRDHQQTTGFVIHRCQIV ADEELAGSNKNKSGSSALVTTYLGRPWKEYARTVVMESIIGGFVHGQGYMPWEGKDDLGTAFFGEFRNGGDGANATGRKEMKGFHVMGKDKALRFTVGHF LH |
Full Sequence |
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Protein Sequence Length: 597 Download |
MPSSDGGQSS SRLVVGVLSA CLLVAMVIGT VVFFVNEMAG YGSESKRSMS KTMRSVELFC 60 APADFQGTCR DTLESALSRT DPAEHPHAAA AAAITAVERA LAEGFNRTSV LDAVRQSNDT 120 LVWEAIRDCR MLLEDCQGNV QRALSSIAWR GVDGPAQDLQ SWLSAVITFQ GSCVDMFPKG 180 EVRDEVNATM EKAREISSNA LAIIKQGAAL ASMIDINGGP DDGDDDANGK GERQLEEEGE 240 PASSASSVPT WVPSEERKLL GVKGGRRKAA LTPNVTVAKD GSGDFANISA ALDAMPEKYT 300 GRYFIYVKEG VYDEMVNITG RMANVTMYGD GSKRSVVTGN KNIVDGVRMW RTATFAVDGD 360 SFMAMKLGIK NTAGVEKQQA LALRVKGDKA IFFNCRIEGN QDTLFAQAYR QFYRSCVISG 420 TVDFIMGDAA AVFQRCLLVV RQPRQGQPAV VTAQSRRDHQ QTTGFVIHRC QIVADEELAG 480 SNKNKSGSSA LVTTYLGRPW KEYARTVVME SIIGGFVHGQ GYMPWEGKDD LGTAFFGEFR 540 NGGDGANATG RKEMKGFHVM GKDKALRFTV GHFLHGADWI PETGTPVSLG LSGEEE* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02990 | PLN02990 | 5.0e-118 | 13 | 586 | 597 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 8.0e-121 | 12 | 591 | 583 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 3.0e-131 | 8 | 586 | 605 | + pectinesterase | ||
pfam01095 | Pectinesterase | 3.0e-143 | 274 | 576 | 304 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 2.0e-180 | 12 | 591 | 601 | + Putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89480.1 | 0 | 43 | 591 | 69 | 596 | pectin methylesterase [Salix gilgiana] |
GenBank | EAY90351.1 | 0 | 45 | 593 | 46 | 602 | hypothetical protein OsI_11933 [Oryza sativa Indica Group] |
RefSeq | NP_001050306.1 | 0 | 45 | 593 | 46 | 602 | Os03g0399000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002324181.1 | 0 | 44 | 591 | 67 | 592 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002467727.1 | 0 | 1 | 596 | 1 | 596 | hypothetical protein SORBIDRAFT_01g033140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 271 | 591 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 273 | 591 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 3e-18 | 270 | 581 | 1 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 3e-18 | 270 | 581 | 1 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 3e-18 | 270 | 581 | 1 | 339 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |