| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g033200.1 |
| Family | CBM43 |
| Protein Properties | Length: 503 Molecular Weight: 53641.9 Isoelectric Point: 7.4245 |
| Chromosome | Chromosome/Scaffold: 1 Start: 56423582 End: 56425469 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 373 | 454 | 2.8e-23 |
| WCVLRQDASATDPAIAGAVGYACQYSDCTSLGAGSSCGNLDARANVSYAFNQFFQAANQQKSACNFNNLSVITTTDPSQGTC | |||
| GH17 | 31 | 352 | 0 |
| AANWGTRALHPLPGDITVRLLRDNGFDKVKLFEADPNALRALGHSGIQVMLGLPNDLLASVAGSVNAAEQWVIQNVSTYVSRYGVDIRYVAVGNEPFLKS YKGKFESATLPAVQNVQAALVKAGLARQVHVTVPLNADVYESGDGKPSSGDFRPDIAGLMVSLVRFLLDNGGVLTINIYPFLSLYADANFPVDYAYFPSP GAPPSQASVQDGNVLYTNVFDANYDTLIAALEKHGLGAIPVVVGEIGWPTDGDKNANAANAQRFNQGLFDRIVAGKGTPRRPTMPDVYVFALLDEDNKSV DPGNFERHWGVFNYDGSPKYQL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 503 Download |
| MAAALRALAV LLWVAAAYPV VFRARPVQAL AANWGTRALH PLPGDITVRL LRDNGFDKVK 60 LFEADPNALR ALGHSGIQVM LGLPNDLLAS VAGSVNAAEQ WVIQNVSTYV SRYGVDIRYV 120 AVGNEPFLKS YKGKFESATL PAVQNVQAAL VKAGLARQVH VTVPLNADVY ESGDGKPSSG 180 DFRPDIAGLM VSLVRFLLDN GGVLTINIYP FLSLYADANF PVDYAYFPSP GAPPSQASVQ 240 DGNVLYTNVF DANYDTLIAA LEKHGLGAIP VVVGEIGWPT DGDKNANAAN AQRFNQGLFD 300 RIVAGKGTPR RPTMPDVYVF ALLDEDNKSV DPGNFERHWG VFNYDGSPKY QLRLAAGRSI 360 VPAKGVRYLS KQWCVLRQDA SATDPAIAGA VGYACQYSDC TSLGAGSSCG NLDARANVSY 420 AFNQFFQAAN QQKSACNFNN LSVITTTDPS QGTCRFEIMI DTGRHELTGK SPSAAPRVAL 480 ASSSWSAVLV LALVGLTTLL AC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 267 | 345 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-6 | 372 | 441 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-20 | 372 | 456 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-70 | 48 | 352 | 308 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP12947.1 | 0 | 23 | 467 | 22 | 466 | putative 1,3-beta-glucanase [Oryza sativa Japonica Group] |
| GenBank | EAY90344.1 | 0 | 23 | 467 | 22 | 466 | hypothetical protein OsI_11921 [Oryza sativa Indica Group] |
| RefSeq | NP_001147933.1 | 0 | 23 | 477 | 23 | 477 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
| RefSeq | XP_002467735.1 | 0 | 23 | 502 | 23 | 502 | hypothetical protein SORBIDRAFT_01g033200 [Sorghum bicolor] |
| RefSeq | XP_002516181.1 | 0 | 25 | 496 | 37 | 497 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 2.8026e-45 | 48 | 342 | 19 | 294 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1aq0_B | 2.8026e-45 | 48 | 342 | 19 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 2.8026e-45 | 48 | 342 | 19 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1ghs_B | 2.99878e-43 | 48 | 354 | 19 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 2.99878e-43 | 48 | 354 | 19 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
