| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g034190.1 |
| Family | CBM43 |
| Protein Properties | Length: 428 Molecular Weight: 42975.9 Isoelectric Point: 4.8965 |
| Chromosome | Chromosome/Scaffold: 1 Start: 57636134 End: 57637631 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 223 | 304 | 3.7e-30 |
| CVALQNADPTALQAGLNWACGQGQADCSAIQPGGACYQQNNLAALASYAYNDYYQKMASTGATCSFNGTATTTTNDPSSGSC | |||
| GH17 | 5 | 163 | 3.1e-33 |
| NSPSELAKIVQSKQTRQARVCGPDPALLRSLAGIDGAEVMVTIPNAQLEHVAEFQEEADLWVAANVAPFLPATRITHVLAGDDVLVASSPGGSASAYFLV PAMRNLRSALAAAGLGGRVKVSSALSGEALADPAWSGVVAHVLRFLESSGSPLFLKSRP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 428 Download |
| MASENSPSEL AKIVQSKQTR QARVCGPDPA LLRSLAGIDG AEVMVTIPNA QLEHVAEFQE 60 EADLWVAANV APFLPATRIT HVLAGDDVLV ASSPGGSASA YFLVPAMRNL RSALAAAGLG 120 GRVKVSSALS GEALADPAWS GVVAHVLRFL ESSGSPLFLK SRPSEASDAK VDAAMRALGV 180 SRVPVIAADL AAGGDVVPYY YYYGYGYPGE GGQRRSLATG TFCVALQNAD PTALQAGLNW 240 ACGQGQADCS AIQPGGACYQ QNNLAALASY AYNDYYQKMA STGATCSFNG TATTTTNDPS 300 SGSCVFAGSS TAGGSNSSAP VGTTPPTSLS PPTGFTPPVG SSPPSSSEFS PPSGFTPPSG 360 FTPPAGGGFG PSFGTPPGSF NGTGSFGPSG TLNPYNGVSR GLSFSRAGLT ALSAAAVAVL 420 LVSMDAM* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 3.0e-12 | 221 | 293 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-18 | 6 | 163 | 168 | + Glycosyl hydrolases family 17. | ||
| smart00768 | X8 | 4.0e-27 | 221 | 306 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC75349.1 | 0 | 4 | 308 | 35 | 352 | hypothetical protein OsI_11774 [Oryza sativa Indica Group] |
| RefSeq | NP_001050214.1 | 0 | 4 | 393 | 35 | 433 | Os03g0374600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150091.1 | 0 | 210 | 341 | 49 | 176 | LOC100283720 [Zea mays] |
| RefSeq | XP_002463238.1 | 0 | 210 | 341 | 45 | 172 | hypothetical protein SORBIDRAFT_02g040340 [Sorghum bicolor] |
| RefSeq | XP_002467792.1 | 0 | 1 | 427 | 1 | 427 | hypothetical protein SORBIDRAFT_01g034190 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.00000000000002 | 218 | 306 | 9 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 2cyg_A | 0.00000000000008 | 7 | 163 | 15 | 175 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0.000000000002 | 1 | 158 | 8 | 174 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0.000000000002 | 1 | 158 | 8 | 174 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0.000000000002 | 1 | 158 | 8 | 174 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG400499 | 246 | 3 | 243 | 0 |
| FL856255 | 239 | 3 | 235 | 0 |
| EE048168 | 192 | 123 | 306 | 0 |
| EC899543 | 191 | 123 | 305 | 0 |
| EC880993 | 192 | 123 | 306 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
