| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g035370.1 |
| Family | GH14 |
| Protein Properties | Length: 530 Molecular Weight: 55356.2 Isoelectric Point: 5.7766 |
| Chromosome | Chromosome/Scaffold: 1 Start: 58904172 End: 58906158 |
| Description | beta-amylase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 88 | 478 | 0 |
| FVGLPADAVVSDGRGVSRPRAVSAALRALKLLGVDGVELPVSWAVVQPGAGGWFEWAGYRAVAAMVRDAGLHLRVSLRTDGDALPEWVADAADADPDVLF TDRSGHRRVGCLSFAVDELPVLLGKSPLQAYEAFFRSFADEFEDFLGSTITDVTVSLGPNGELQFPSYPPGNHGAGGYAGIGEFQCYDKYMLARLKRHAE SSGQPLWGLSGPHDGPRYDESPESSAFFREPGGSWKSAYGEFFLSWYAGELLAHGDRVLAAASRALGGKPVALSAKVPLLRGPSPVDATAGLHGGYGPVA EMFARHGCAVIASGVEAQPDATAEDRLARLKAACAEHGARLAAESAPLAAARDGAGAAGGVWLSAGRTRPCQFTYQRMGAEFFSPAHWPLF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 530 Download |
| MEAALMQQAA AAAAARWRCV GDASLAGHGQ QHLAGVVRLG VARRAASRAV RASSSTRLLA 60 PVRALVSEAA GERAAEGEEE EGAAVRLFVG LPADAVVSDG RGVSRPRAVS AALRALKLLG 120 VDGVELPVSW AVVQPGAGGW FEWAGYRAVA AMVRDAGLHL RVSLRTDGDA LPEWVADAAD 180 ADPDVLFTDR SGHRRVGCLS FAVDELPVLL GKSPLQAYEA FFRSFADEFE DFLGSTITDV 240 TVSLGPNGEL QFPSYPPGNH GAGGYAGIGE FQCYDKYMLA RLKRHAESSG QPLWGLSGPH 300 DGPRYDESPE SSAFFREPGG SWKSAYGEFF LSWYAGELLA HGDRVLAAAS RALGGKPVAL 360 SAKVPLLRGP SPVDATAGLH GGYGPVAEMF ARHGCAVIAS GVEAQPDATA EDRLARLKAA 420 CAEHGARLAA ESAPLAAARD GAGAAGGVWL SAGRTRPCQF TYQRMGAEFF SPAHWPLFVQ 480 FVRALECPEE AHEDDLPGSA DGGARLTVPS AAAAAPRGEA TREVQIQTV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 3.0e-49 | 85 | 405 | 342 | + beta-amylase | ||
| PLN02801 | PLN02801 | 4.0e-56 | 85 | 394 | 331 | + beta-amylase | ||
| PLN02161 | PLN02161 | 1.0e-60 | 85 | 485 | 437 | + beta-amylase | ||
| PLN00197 | PLN00197 | 3.0e-72 | 85 | 492 | 442 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 8.0e-80 | 85 | 524 | 468 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95933.1 | 0 | 86 | 529 | 84 | 524 | Glycosyl hydrolase family 14 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001050116.1 | 0 | 143 | 529 | 314 | 696 | Os03g0351300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001060573.1 | 0 | 19 | 516 | 2 | 522 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151271.1 | 0 | 16 | 526 | 19 | 536 | beta-amylase [Zea mays] |
| RefSeq | XP_002467860.1 | 0 | 1 | 529 | 1 | 529 | hypothetical protein SORBIDRAFT_01g035370 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1b1y_A | 0 | 81 | 515 | 2 | 467 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 1wdr_A | 0 | 85 | 490 | 12 | 446 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1q6g_A | 0 | 85 | 490 | 12 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 2dqx_A | 0 | 85 | 490 | 12 | 446 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
| PDB | 1q6d_A | 0 | 85 | 490 | 12 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC882298 | 248 | 270 | 510 | 0 |
| FL869001 | 242 | 185 | 425 | 0 |
| FL749726 | 291 | 185 | 475 | 0 |
| CB675455 | 259 | 89 | 346 | 0 |
| FL809538 | 215 | 296 | 510 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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