| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g036960.1 |
| Family | GH51 |
| Protein Properties | Length: 425 Molecular Weight: 46753.4 Isoelectric Point: 4.6993 |
| Chromosome | Chromosome/Scaffold: 1 Start: 60513564 End: 60517125 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 1 | 288 | 0 |
| MLANLKPRFLKFPGGNYVMGNYLINAFRWSETVGPWEERPGHFNDAWAYWTDDGLGFFEFLQLAEDLGACPVWVVNDGASIYQEVSSATIAAFVKDVVNG IEFARGDPETAWGSVRAAMGHPEPFQLYYVSIGNQECSKYYYKDNYVKFYSAIKASYPDIKIISSCDRSAISPVNPADLYDVHVYTSSGDMFSKSRMFDN TARNGPKAIVSEYAVTGSDAGRGTLIAALAEAAFLIGLERNSDMVEMASCAPLFVNDNDQRWNPDAIVFNSWQHYGCPNYWILHFFKD | |||
| Full Sequence |
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| Protein Sequence Length: 425 Download |
| MLANLKPRFL KFPGGNYVMG NYLINAFRWS ETVGPWEERP GHFNDAWAYW TDDGLGFFEF 60 LQLAEDLGAC PVWVVNDGAS IYQEVSSATI AAFVKDVVNG IEFARGDPET AWGSVRAAMG 120 HPEPFQLYYV SIGNQECSKY YYKDNYVKFY SAIKASYPDI KIISSCDRSA ISPVNPADLY 180 DVHVYTSSGD MFSKSRMFDN TARNGPKAIV SEYAVTGSDA GRGTLIAALA EAAFLIGLER 240 NSDMVEMASC APLFVNDNDQ RWNPDAIVFN SWQHYGCPNY WILHFFKDSS GAALHPSTIQ 300 LPNYDQLVTS AITWNNPHDG NTYLKIKVVN FGSKAVNLNI SVTGLEADIQ TFGSLKTVLT 360 SGWLRDENSF QQPDKVVPAA SPITNAGKQM GVVLNSYSLT SFDLLLDSDQ SVPPVSVSSL 420 HSSV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 3.0e-23 | 1 | 135 | 135 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 5.0e-25 | 240 | 388 | 157 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 1.0e-34 | 211 | 394 | 194 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95656.1 | 0 | 1 | 424 | 252 | 675 | Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC75141.1 | 0 | 1 | 424 | 256 | 679 | hypothetical protein OsI_11337 [Oryza sativa Indica Group] |
| GenBank | EEE58961.1 | 0 | 1 | 424 | 256 | 679 | hypothetical protein OsJ_10647 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060688.1 | 0 | 1 | 406 | 11 | 416 | Os07g0686900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002465350.1 | 0 | 1 | 424 | 1 | 424 | hypothetical protein SORBIDRAFT_01g036960 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4atw_F | 0.0000000000003 | 10 | 305 | 65 | 372 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_E | 0.0000000000003 | 10 | 305 | 65 | 372 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_D | 0.0000000000003 | 10 | 305 | 65 | 372 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_C | 0.0000000000003 | 10 | 305 | 65 | 372 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_B | 0.0000000000003 | 10 | 305 | 65 | 372 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT045875 | 336 | 22 | 357 | 0 |
| JG925332 | 289 | 106 | 394 | 0 |
| HO852683 | 396 | 1 | 394 | 0 |
| CB650175 | 293 | 33 | 325 | 0 |
| JG886672 | 256 | 140 | 395 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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