| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g037900.1 |
| Family | CE8 |
| Protein Properties | Length: 569 Molecular Weight: 62553 Isoelectric Point: 8.5665 |
| Chromosome | Chromosome/Scaffold: 1 Start: 61451937 End: 61453895 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 245 | 543 | 0 |
| DVTVAKDGSGDFRTINAALAKVPVKSAATYVMYVKAGTYREYVSVPRNVTNLVMVGDGATKTVITGDKSFMMNITTKDTATMEALGNGFLMRGIGVENTA GAKNHQAVALRVQSDMSAFYECRFDGYQDTLYTHTSRQYYRECVITGTIDFIFGNAQVVFQNCLIQVRKCMDNQQNIVTAQGRKERRSAGGTVIHNCTIE PHPEFEKSAGDGKLRTFLGRPWKEHSRTLYIQSEIGGFIDPKGWLPWLGDFGLSTCYYAEVENRGAGADTSKRVKWRGVKNITYQHALQKYTVESFIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 569 Download |
| MKGAVIGAST VLVVAVVATI CVVSLRGSGD GDSREEGEMS TSVKSIKSFC QPVDYRETCE 60 KALRAAAGNA TSPTDLAKAI FKVTSDRIEK AVRESAVLNE LKNDPRTKGA LDNCRELLDY 120 AIDDLKTTFD RLGGFEMTNF KSAVDDLRTW LSSALTYQET CLDGFENTTT AAAGKMRRAL 180 NSSQELTENI LALVDEFSET LANLGIPSFH RRLLADHAGG VPSWMPDAKR RLRKVSPGDK 240 GFKPDVTVAK DGSGDFRTIN AALAKVPVKS AATYVMYVKA GTYREYVSVP RNVTNLVMVG 300 DGATKTVITG DKSFMMNITT KDTATMEALG NGFLMRGIGV ENTAGAKNHQ AVALRVQSDM 360 SAFYECRFDG YQDTLYTHTS RQYYRECVIT GTIDFIFGNA QVVFQNCLIQ VRKCMDNQQN 420 IVTAQGRKER RSAGGTVIHN CTIEPHPEFE KSAGDGKLRT FLGRPWKEHS RTLYIQSEIG 480 GFIDPKGWLP WLGDFGLSTC YYAEVENRGA GADTSKRVKW RGVKNITYQH ALQKYTVESF 540 IQGQHWLPQL GVPFIPGLLP QNQSGRIH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 2.0e-163 | 39 | 558 | 523 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 6.0e-164 | 41 | 554 | 528 | + pectinesterase | ||
| pfam01095 | Pectinesterase | 3.0e-168 | 245 | 543 | 299 | + Pectinesterase. | ||
| PLN02745 | PLN02745 | 0 | 44 | 558 | 526 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02217 | PLN02217 | 0 | 39 | 562 | 525 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ05229.1 | 0 | 39 | 568 | 38 | 570 | hypothetical protein OsI_27427 [Oryza sativa Indica Group] |
| RefSeq | NP_001049858.1 | 0 | 28 | 568 | 28 | 565 | Os03g0300500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001060715.1 | 0 | 39 | 568 | 38 | 566 | Os07g0691100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002461260.1 | 0 | 29 | 568 | 34 | 571 | hypothetical protein SORBIDRAFT_02g043780 [Sorghum bicolor] |
| RefSeq | XP_002465396.1 | 0 | 25 | 568 | 25 | 568 | hypothetical protein SORBIDRAFT_01g037900 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 244 | 558 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 245 | 558 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-16 | 255 | 485 | 43 | 283 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.000000000000005 | 256 | 485 | 18 | 259 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.000000000000005 | 256 | 485 | 18 | 259 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
