| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g038220.1 |
| Family | CBM43 |
| Protein Properties | Length: 488 Molecular Weight: 52499.2 Isoelectric Point: 7.8025 |
| Chromosome | Chromosome/Scaffold: 1 Start: 61773912 End: 61776555 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 372 | 451 | 2.6e-24 |
| WCVLDNNKDLSNVSSSFSSACSKGDCTSLLPGGSCSGLAWPGNVSYAFNNYYQQHDQSEDSCYFNGLGLITTVDPSVDNC | |||
| GH17 | 32 | 350 | 0 |
| VGVNWGFASSLSLPAAQVVRGLLLPNSVPRVRLAAASSDALAALAGTGIAVSVGIPDALLRPLASSTKAAAAWVHDNVTRYSSSVRFEYIVVGDEPFLLR HGQNFHPFVVRAAENVQQALVHAKLSGKMKVLVPCTADTFQNASILPSKASFRSDVNKTMADLLSFLANSSSPFMVELDPFLSFQHNKNMSLDYYLFQLM SHPVKDGQNKYDNYVDASIDALVTSLTKAGFSDMDIIVGRAGWPTDGAVNATPAIAQSFMTGLVNHLGKKSGTPLRPKVPPIEMYLFSLLDEDQRSIASG GYERHHGIFTFDGQAKYYA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 488 Download |
| MPSTRLRPPP PFVPGLLLLL LAMAPPPPAS AVGVNWGFAS SLSLPAAQVV RGLLLPNSVP 60 RVRLAAASSD ALAALAGTGI AVSVGIPDAL LRPLASSTKA AAAWVHDNVT RYSSSVRFEY 120 IVVGDEPFLL RHGQNFHPFV VRAAENVQQA LVHAKLSGKM KVLVPCTADT FQNASILPSK 180 ASFRSDVNKT MADLLSFLAN SSSPFMVELD PFLSFQHNKN MSLDYYLFQL MSHPVKDGQN 240 KYDNYVDASI DALVTSLTKA GFSDMDIIVG RAGWPTDGAV NATPAIAQSF MTGLVNHLGK 300 KSGTPLRPKV PPIEMYLFSL LDEDQRSIAS GGYERHHGIF TFDGQAKYYA NIGQGPKSLK 360 NAPAVNYLPS KWCVLDNNKD LSNVSSSFSS ACSKGDCTSL LPGGSCSGLA WPGNVSYAFN 420 NYYQQHDQSE DSCYFNGLGL ITTVDPSVDN CLFPLAIRTS AATSLHLTLP VLLLLVLWFL 480 HCLYIVW* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.004 | 266 | 343 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 5.0e-10 | 371 | 439 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-23 | 371 | 453 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-57 | 32 | 348 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95444.1 | 0 | 32 | 484 | 35 | 485 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACF78459.1 | 0 | 32 | 479 | 32 | 479 | unknown [Zea mays] |
| GenBank | EEC75046.1 | 0 | 32 | 484 | 35 | 485 | hypothetical protein OsI_11151 [Oryza sativa Indica Group] |
| RefSeq | NP_001130286.1 | 0 | 32 | 479 | 32 | 479 | hypothetical protein LOC100191380 [Zea mays] |
| RefSeq | XP_002468022.1 | 0 | 1 | 466 | 1 | 466 | hypothetical protein SORBIDRAFT_01g038220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 1.4013e-45 | 32 | 352 | 2 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 3f55_C | 1.4013e-45 | 32 | 352 | 2 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 3f55_B | 1.4013e-45 | 32 | 352 | 2 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 3f55_A | 1.4013e-45 | 32 | 352 | 2 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 3em5_D | 1.4013e-45 | 32 | 352 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
