| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g041310.1 |
| Family | GH10 |
| Protein Properties | Length: 561 Molecular Weight: 62814.1 Isoelectric Point: 5.7517 |
| Chromosome | Chromosome/Scaffold: 1 Start: 64618173 End: 64621440 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 214 | 474 | 0 |
| QTAKDFPIGSAIASTILGNQAYQQWFVDRFNAAVFEDELKWYSTEPMSGLLRFDVPDQMLAFVRSHRVMVRGHNIFWENQDATPRWVKNLTADDLRSAVN TRIQSLMTRYRGEFAHWDVNNEMLHYNFYEQRLGPNASMDFFSVAQDADPLATLFMNEYNVIETCDDPFSTVDTYVAKLKELRSGGAILEGIGLEGHFSK PNIPLMRAILDKLATLGLPIWFTEIDISNKFDAQTQAAYLEQVLREAYSHPAVSGVMLWTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 561 Download |
| MKMHRFALPG LGFLVLWMLL HCGSELAAAV PPDGWYDYSA YTDCRGQPEP ALYNGGILKF 60 GNSDDSDGYR TTETGVFSPA FVVYNLNKTT MYTFSCWVKL EGAYSALITA RLAPDNTGAR 120 CIATVLARSD CWAFVKGGFV LDWPTQTSVI FFQNADKTPM KITVASGSLQ PFTTDQWAMH 180 QQDTIRKRRK RVATIHVADP QGARVVGASV SVQQTAKDFP IGSAIASTIL GNQAYQQWFV 240 DRFNAAVFED ELKWYSTEPM SGLLRFDVPD QMLAFVRSHR VMVRGHNIFW ENQDATPRWV 300 KNLTADDLRS AVNTRIQSLM TRYRGEFAHW DVNNEMLHYN FYEQRLGPNA SMDFFSVAQD 360 ADPLATLFMN EYNVIETCDD PFSTVDTYVA KLKELRSGGA ILEGIGLEGH FSKPNIPLMR 420 AILDKLATLG LPIWFTEIDI SNKFDAQTQA AYLEQVLREA YSHPAVSGVM LWTALHPSGC 480 YQMCLTDWNL ANLPTGDVVD RLLNEWRTLQ AGGQTDAHGA YSFSGYLGEY VLTVSYNNRT 540 TQSTFSLSPG DETRHINVQM * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.001 | 494 | 560 | 74 | + Carboxypeptidase regulatory-like domain. | ||
| COG3693 | XynA | 5.0e-35 | 203 | 472 | 289 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-55 | 216 | 472 | 277 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-68 | 252 | 499 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94920.1 | 0 | 3 | 560 | 1 | 563 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94921.1 | 0 | 3 | 560 | 1 | 558 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74851.1 | 0 | 2 | 560 | 159 | 717 | hypothetical protein OsI_10717 [Oryza sativa Indica Group] |
| RefSeq | NP_001140909.1 | 0 | 1 | 560 | 1 | 560 | hypothetical protein LOC100272986 [Zea mays] |
| RefSeq | XP_002468186.1 | 0 | 1 | 560 | 1 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-29 | 221 | 472 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 3msg_B | 4e-28 | 216 | 441 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 3msg_A | 4e-28 | 216 | 441 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 3msd_B | 4e-28 | 216 | 441 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 3msd_A | 4e-28 | 216 | 441 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
