| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g042410.1 |
| Family | CE11 |
| Protein Properties | Length: 338 Molecular Weight: 36242 Isoelectric Point: 5.5824 |
| Chromosome | Chromosome/Scaffold: 1 Start: 65674674 End: 65681953 |
| Description | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE11 | 26 | 310 | 0 |
| QQTLAAAVSRSGVGLHSGARVTATLFPTQAGEGRYFLVEGEEEAKVAAEVGNAEPRSQLCTTLRRGEGAHTRVRTVEHLLSAMEALGVDNCRIEVSGGDE IPLLDGSAQEWVEAIQSVGLCAAEDANGLKLDKLAPEIHEPVYLGKDDCFIAAFPSSQIHITYGIDFPKVPTIGCQWVSTFLDENIYSSKIAPARTFCIF EEVEKMRAAGLIKGGSLENAMVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLFAQNGNQGFPIAHIIAYKAGHALHTDFLSHL | |||
| Full Sequence |
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| Protein Sequence Length: 338 Download |
| MSSAAARALT SVSRAAFSWK PTGRPQQTLA AAVSRSGVGL HSGARVTATL FPTQAGEGRY 60 FLVEGEEEAK VAAEVGNAEP RSQLCTTLRR GEGAHTRVRT VEHLLSAMEA LGVDNCRIEV 120 SGGDEIPLLD GSAQEWVEAI QSVGLCAAED ANGLKLDKLA PEIHEPVYLG KDDCFIAAFP 180 SSQIHITYGI DFPKVPTIGC QWVSTFLDEN IYSSKIAPAR TFCIFEEVEK MRAAGLIKGG 240 SLENAMVCSI SGGWLNPPLR FEDEPCRHKI LDLIGDFSLF AQNGNQGFPI AHIIAYKAGH 300 ALHTDFLSHL SGKNTVDQEQ LAGQCSNICG SYSSYVR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK13188 | PRK13188 | 6.0e-62 | 26 | 306 | 307 | + bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed | ||
| TIGR00325 | lpxC | 4.0e-74 | 26 | 307 | 283 | + UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam03331 | LpxC | 6.0e-90 | 26 | 307 | 283 | + UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. | ||
| COG0774 | LpxC | 7.0e-92 | 26 | 307 | 286 | + UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane] | ||
| PRK13186 | lpxC | 6.0e-107 | 26 | 310 | 287 | + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008759 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN52736.1 | 0 | 1 | 325 | 1 | 315 | Hypothetical protein [Oryza sativa Japonica Group] |
| GenBank | ABF94722.1 | 0 | 1 | 284 | 1 | 280 | UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEE58623.1 | 0 | 1 | 325 | 1 | 322 | hypothetical protein OsJ_09977 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049426.1 | 0 | 1 | 325 | 1 | 321 | Os03g0223900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002468246.1 | 0 | 1 | 337 | 1 | 337 | hypothetical protein SORBIDRAFT_01g042410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4fw7_D | 4e-36 | 26 | 310 | 7 | 277 | A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose. |
| PDB | 4fw7_C | 4e-36 | 26 | 310 | 7 | 277 | A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose. |
| PDB | 4fw7_B | 4e-36 | 26 | 310 | 7 | 277 | A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose. |
| PDB | 4fw7_A | 4e-36 | 26 | 310 | 7 | 277 | A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose. |
| PDB | 4fw6_D | 4e-36 | 26 | 310 | 7 | 277 | A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose. |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lipid IVA biosynthesis | UDPACYLGLCNACDEACETYL-RXN | EC-3.5.1.108 | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CA246559 | 216 | 122 | 337 | 0 |
| HX136805 | 260 | 7 | 266 | 0 |
| CT850072 | 299 | 1 | 299 | 0 |
| CK207177 | 250 | 7 | 256 | 0 |
| CA238382 | 187 | 122 | 308 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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