| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g042560.1 |
| Family | CBM43 |
| Protein Properties | Length: 503 Molecular Weight: 53576.8 Isoelectric Point: 5.6821 |
| Chromosome | Chromosome/Scaffold: 1 Start: 65815762 End: 65820111 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 365 | 446 | 2.5e-30 |
| CVARDGADPKMLQAALDWACGPGKVDCSVLMQGQPCYDPDTVEAHATYAFNAYYHGMGMGSGTCYFSGVAVVTTTDPSHGSC | |||
| GH17 | 26 | 346 | 0 |
| IGVNIGTAMSSVPAPTQITTLLRSQNIRHVRLYDADPAMLAALSNTGIRVIVSVPNEQLLAIGNSNATAANWVARNVAAHFPAVNITAIAVGSEVLSAQP NAAPLLMPAMRYLQNALVAAALDRYIKISTPHSSSIILDSFPPSQAFFNRSLDNVLVPMLKFLQSTGSPLMLNVYPYYDYMRSNGVIPLDYALFRPLPPN KEAVDANTLLHYTNVFDAVVDAAYFAMAYLNVTNVPVMVTETGWPHKGDPSSEPDATSDNADTYNSNLIRHVMNSTGTPKHPGVAVPTYIYELYDEDTRP GSTSEKYWGLFDMNGVPAYTL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 503 Download |
| MKKLFFVSFV LLLAAPAVHG EDGAYIGVNI GTAMSSVPAP TQITTLLRSQ NIRHVRLYDA 60 DPAMLAALSN TGIRVIVSVP NEQLLAIGNS NATAANWVAR NVAAHFPAVN ITAIAVGSEV 120 LSAQPNAAPL LMPAMRYLQN ALVAAALDRY IKISTPHSSS IILDSFPPSQ AFFNRSLDNV 180 LVPMLKFLQS TGSPLMLNVY PYYDYMRSNG VIPLDYALFR PLPPNKEAVD ANTLLHYTNV 240 FDAVVDAAYF AMAYLNVTNV PVMVTETGWP HKGDPSSEPD ATSDNADTYN SNLIRHVMNS 300 TGTPKHPGVA VPTYIYELYD EDTRPGSTSE KYWGLFDMNG VPAYTLHLTG SGVLLANDTT 360 NQTYCVARDG ADPKMLQAAL DWACGPGKVD CSVLMQGQPC YDPDTVEAHA TYAFNAYYHG 420 MGMGSGTCYF SGVAVVTTTD PSHGSCVYSG KNATALMNGT SLAPSSNSTE GGSGAHRAFG 480 DVSSLARIVS TALLFSVGLL LL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-7 | 258 | 336 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-18 | 363 | 435 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-39 | 363 | 448 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-81 | 26 | 346 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN30650.1 | 0 | 1 | 489 | 1 | 489 | unknown [Zea mays] |
| RefSeq | NP_001049413.1 | 0 | 1 | 487 | 1 | 490 | Os03g0221500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130376.1 | 0 | 1 | 492 | 1 | 492 | hypothetical protein LOC100191471 [Zea mays] |
| RefSeq | NP_001150141.1 | 0 | 19 | 489 | 19 | 489 | glucan endo-1,3-beta-glucosidase 3 [Zea mays] |
| RefSeq | XP_002468258.1 | 0 | 1 | 502 | 1 | 502 | hypothetical protein SORBIDRAFT_01g042560 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 26 | 348 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 26 | 349 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 26 | 349 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 26 | 349 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 26 | 349 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
