| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g042735.1 |
| Family | GH28 |
| Protein Properties | Length: 398 Molecular Weight: 43394.1 Isoelectric Point: 5.5579 |
| Chromosome | Chromosome/Scaffold: 1 Start: 65993803 End: 65997107 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 378 | 0 |
| EACNSSDDRSVFLVPEGKAYLLMPVIFRGPCRAVSITAMIKGTLEAPSNRSVWLDQDLQEWITFEGIDRLRVLGGGTLDGNGLQWWINSCKLNKSMRCVI GPTALYFRRCTHLVVEELEVRDSMQMHVAIAYSWNVVVSKLLITAPGWSPNTDGIHVSNSREVSISKCTISTGDDCISIVTGSMFVRVTSIFCGPGHGIS IGSLGANNSWAHVSDVLVEKATLLGTTNGVRIKTWQGGHGYAERISFQDISMHNVTNPIIIDQNYCDSKRPCHEQGSAVAVRNIRYRNIHGTSASKVAVN FICSGALHCDGILMQDIYLVGEGRYATCS | |||
| Full Sequence |
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| Protein Sequence Length: 398 Download |
| PEADGPAAEN SDELWLRSGP PPRVVDVDDY GAGDAGGDHV TEAFLEAWSE ACNSSDDRSV 60 FLVPEGKAYL LMPVIFRGPC RAVSITAMIK GTLEAPSNRS VWLDQDLQEW ITFEGIDRLR 120 VLGGGTLDGN GLQWWINSCK LNKSMRCVIG PTALYFRRCT HLVVEELEVR DSMQMHVAIA 180 YSWNVVVSKL LITAPGWSPN TDGIHVSNSR EVSISKCTIS TGDDCISIVT GSMFVRVTSI 240 FCGPGHGISI GSLGANNSWA HVSDVLVEKA TLLGTTNGVR IKTWQGGHGY AERISFQDIS 300 MHNVTNPIII DQNYCDSKRP CHEQGSAVAV RNIRYRNIHG TSASKVAVNF ICSGALHCDG 360 ILMQDIYLVG EGRYATCSYT NATVVQFGYN FPFCSAEM 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 9.0e-84 | 41 | 392 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-94 | 41 | 379 | 342 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-100 | 59 | 384 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-118 | 41 | 395 | 357 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-127 | 41 | 368 | 328 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL53778.1 | 0 | 2 | 398 | 34 | 437 | unknown [Zea mays] |
| GenBank | EAZ26072.1 | 0 | 1 | 398 | 39 | 411 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049387.1 | 0 | 1 | 398 | 39 | 438 | Os03g0216800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150245.1 | 0 | 2 | 398 | 34 | 437 | polygalacturonase [Zea mays] |
| RefSeq | XP_002468269.1 | 0 | 1 | 398 | 1 | 398 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 9e-19 | 61 | 379 | 26 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 7e-17 | 108 | 358 | 56 | 308 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-17 | 108 | 358 | 56 | 308 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-17 | 108 | 358 | 56 | 308 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-17 | 108 | 358 | 56 | 308 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BQ840584 | 223 | 43 | 264 | 0 |
| EE041953 | 232 | 2 | 230 | 0 |
| EE012525 | 209 | 2 | 207 | 0 |
| EC886530 | 208 | 2 | 206 | 0 |
| EE170304 | 202 | 2 | 200 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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