| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g043720.1 |
| Family | GH10 |
| Protein Properties | Length: 585 Molecular Weight: 64936.8 Isoelectric Point: 6.8638 |
| Chromosome | Chromosome/Scaffold: 1 Start: 66857102 End: 66861877 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH10 | 236 | 497 | 0 |
| RSGFPLGSAMSAEILQSPAYQRWFTSRFTVTTFENEMKWYSTERVQGREDYSVPDAMLRFAKSHGVAVRGHNVFWDQPSQQPSWVRSLSYQQLQQATARR IKSVMSRYAGQVIAWDVVNENLHFNYFEGKFGWDASAEFYRKAHQLDAQALMSMNEYNTLEWPGDPMAGPSKYLGKLFQIKKFPGNANDARMAIGLEGHF SVPSIPYIRAALDTMSKANAPIWLTEIDVAPGPNQAHYLEQILREVYAHPAVHGIILWTARH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 585 Download |
| MEERGVAAMG RAQAFLFLSL LWVAMLSAAP RVVQSLPYDY SSSSECLPEP LEPQYGGGIL 60 RNANFSAGLQ GWSSFGYGAV EEGLSESGNS YGVARNRTRP YQSVSQKVFL QNDTHYTLSA 120 WLQVSNGSAD IRAVVKTNGE FIHAGGVEAR SGCWSILKGG LTAPASGAAE LYFESNTTTV 180 DIWVDNVSLQ PFSREEWAAH HHAAIKSARK KTVRLRARDS SGKPVPGAQV RIEHVRSGFP 240 LGSAMSAEIL QSPAYQRWFT SRFTVTTFEN EMKWYSTERV QGREDYSVPD AMLRFAKSHG 300 VAVRGHNVFW DQPSQQPSWV RSLSYQQLQQ ATARRIKSVM SRYAGQVIAW DVVNENLHFN 360 YFEGKFGWDA SAEFYRKAHQ LDAQALMSMN EYNTLEWPGD PMAGPSKYLG KLFQIKKFPG 420 NANDARMAIG LEGHFSVPSI PYIRAALDTM SKANAPIWLT EIDVAPGPNQ AHYLEQILRE 480 VYAHPAVHGI ILWTARHPQG CYVMCLTDSN FRNLPTGDVV DKLIAEWKTH SHAGVADADG 540 YYEAELFHGD YKVTVSHPVA NSTVVQSLSV DRETDTDSEY TIHV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 3.0e-6 | 57 | 178 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 7.0e-28 | 263 | 493 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-45 | 239 | 493 | 277 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-73 | 272 | 520 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94510.1 | 0 | 11 | 584 | 4 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN31540.1 | 0 | 34 | 584 | 26 | 575 | unknown [Zea mays] |
| GenBank | EEE58525.1 | 0 | 11 | 584 | 4 | 579 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| GenBank | EEE58525.1 | 0 | 27 | 470 | 556 | 986 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| RefSeq | XP_002465685.1 | 0 | 1 | 584 | 1 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 1e-24 | 241 | 493 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyf_B | 4e-23 | 236 | 496 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1xyf_A | 4e-23 | 236 | 496 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_B | 4e-23 | 236 | 496 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_A | 4e-23 | 236 | 496 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
