| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g043730.1 |
| Family | GH10 |
| Protein Properties | Length: 573 Molecular Weight: 63688.9 Isoelectric Point: 6.5845 |
| Chromosome | Chromosome/Scaffold: 1 Start: 66863039 End: 66865548 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 229 | 490 | 0 |
| AKGFPLGNAMTKEILDMPEYEEWFTKRFKWATMENAMKWYSTEYNEGEEGFVVADKMLALAEKHNISVRGHNVFWDDQSHQMPWVSKLSVDKLRAAVAKH LKSVVSRYAGKVIHWDVVNENLHFSFFEEKLGKDASGEIFKEVAKLDPKPILFMNEFNTIEQPCDKAPLPTKYLAKLRQIQSYPGNEDLKYGIGLESHFA KPNIPYMRGSLDTLAAAKVPIWLTEVDVTKGPKQVEFLEEVMREGFGHPGVKGIVMWAAWHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 573 Download |
| MVSTGKLVFI VLIVLFEGSL VTSKKGYSSE QPTKTTGGYS PKETSEKADV SSTKSSGTVP 60 YDYSANIECI KEPEKPLYGG GIISAADSSG KKCPIKGSVL KVDLKKDYHY ALSVWLKFSK 120 GTGDITAIIV TPDGKFNTAG AIVAKSECWT LLKGGATSYA EGKSDLFFES NSTAEIMAES 180 IALQGFSFEE WNAHREEVVA KERKKKVKIT VESGGKPLPD AELSVVWVAK GFPLGNAMTK 240 EILDMPEYEE WFTKRFKWAT MENAMKWYST EYNEGEEGFV VADKMLALAE KHNISVRGHN 300 VFWDDQSHQM PWVSKLSVDK LRAAVAKHLK SVVSRYAGKV IHWDVVNENL HFSFFEEKLG 360 KDASGEIFKE VAKLDPKPIL FMNEFNTIEQ PCDKAPLPTK YLAKLRQIQS YPGNEDLKYG 420 IGLESHFAKP NIPYMRGSLD TLAAAKVPIW LTEVDVTKGP KQVEFLEEVM REGFGHPGVK 480 GIVMWAAWHA KGCYVMCLTD NNFKNLPQGD LVDRLLDEWR KVPEKPMTDS NGVFEAELFH 540 GEYQVTVKHA SLKEPIVQTV DLDTKSEAAI KA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 5.0e-31 | 235 | 460 | 244 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-45 | 232 | 485 | 273 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-71 | 265 | 512 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94508.1 | 0 | 2 | 571 | 3 | 551 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94509.1 | 0 | 68 | 571 | 9 | 524 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74704.1 | 0 | 2 | 571 | 3 | 551 | hypothetical protein OsI_10420 [Oryza sativa Indica Group] |
| RefSeq | NP_001049300.1 | 0 | 2 | 571 | 3 | 551 | Os03g0201800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002465686.1 | 0 | 1 | 572 | 1 | 572 | hypothetical protein SORBIDRAFT_01g043730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ta3_B | 7e-24 | 221 | 485 | 3 | 268 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1nq6_A | 6e-22 | 234 | 512 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 7e-21 | 256 | 516 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1xyz_B | 8e-21 | 229 | 486 | 34 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 8e-21 | 229 | 486 | 34 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
