| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g043760.1 |
| Family | GH10 |
| Protein Properties | Length: 574 Molecular Weight: 62523.6 Isoelectric Point: 6.1433 |
| Chromosome | Chromosome/Scaffold: 1 Start: 66873980 End: 66876747 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 224 | 487 | 0 |
| RTNFPLGAAVSRYILTNSAYQTWFASRFAVATFENEMKWYSTEPAPGREDYTVPDAMMAFAKSNGIAVRGHNVFWDQPSQQPGWVQSLPYPQLLAAASRR IRSVMSRYAGQVIGWDVVNENLHFNFYEGRFGWDASTAFYAAARLLDTGSALMFLNEYNTLEQPGDMAALPARYLQRLQQIIAAYPENGAGMAIGLEGHF TKPNIPYMRAALDTLAQAGIPVWLTEVDVAPGPSQAQHLEEVLREAYAHPAVQGIVIWSAWQPQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 574 Download |
| MTKVNGLVDK LAFWLGWIAL LQGCMVKSLP YDYSCLPEPL EPQYGGGILR NADFSAGLRG 60 WSTFGYGSIA ESKSAAGNGF AVALNRTRAY QSVSQKVYLQ GDTHYTLSAW LQVSDASADV 120 RAVVKTVGDF VHAGGVVAKA GCWSMLKGGL TAASSGPAEL YFESNATVDL WVDSVSLKPF 180 SKDEWTAHRA QSVVAARKKT VRLQATDSAG NPLEGAAVSL DAVRTNFPLG AAVSRYILTN 240 SAYQTWFASR FAVATFENEM KWYSTEPAPG REDYTVPDAM MAFAKSNGIA VRGHNVFWDQ 300 PSQQPGWVQS LPYPQLLAAA SRRIRSVMSR YAGQVIGWDV VNENLHFNFY EGRFGWDAST 360 AFYAAARLLD TGSALMFLNE YNTLEQPGDM AALPARYLQR LQQIIAAYPE NGAGMAIGLE 420 GHFTKPNIPY MRAALDTLAQ AGIPVWLTEV DVAPGPSQAQ HLEEVLREAY AHPAVQGIVI 480 WSAWQPQGCY VMCLTDNNFK NLPQGDVVDR LIAEWRASPR AGATDAQGYF EADLVHGEYK 540 VTVSHPALNS SISRSVKVEL GSGSEHYFID MQV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.004 | 46 | 110 | 70 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 1.0e-31 | 222 | 481 | 284 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-47 | 219 | 481 | 287 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 7.0e-72 | 260 | 508 | 274 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94504.1 | 0 | 10 | 571 | 3 | 567 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACG36704.1 | 0 | 10 | 573 | 5 | 576 | 1,4-beta-xylanase [Zea mays] |
| GenBank | ACL53134.1 | 0 | 25 | 573 | 6 | 555 | unknown [Zea mays] |
| RefSeq | NP_001130600.1 | 0 | 10 | 573 | 24 | 595 | hypothetical protein LOC100191699 [Zea mays] |
| RefSeq | XP_002468320.1 | 0 | 1 | 573 | 1 | 573 | hypothetical protein SORBIDRAFT_01g043760 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-27 | 229 | 508 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 9e-24 | 229 | 481 | 16 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 9e-24 | 229 | 481 | 16 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 9e-24 | 229 | 481 | 16 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 9e-24 | 229 | 481 | 16 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
