CAZyme Information

Basic Information
SpeciesSorghum bicolor
Cazyme IDSb01g043810.1
FamilyGH43
Protein PropertiesLength: 468 Molecular Weight: 53500.6 Isoelectric Point: 6.993
ChromosomeChromosome/Scaffold: 1 Start: 66895884 End: 66900217
DescriptionArabinanase/levansucrase/invertase
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH431613861e-35
  TNTYFWYGENKDGKTYKAHSKGADRVDIIGVSCYSSKDLWTWKNEGLVLRGEEKNVTHDLHKSNVLERPKVIYNDRTGKYVMWMHIDDANYTKASVGVAV
  SDSPTGPFTYLYSKRPHDCESRDMTIFKDDDGKAYLIYSSEDNSELHIGPLTDDYLDVTDVMRRLLIAQHREAPALFRHEGTYYMVTSGCTGWAPNTALA
  HAATSVMGPWETLGNPCVGGNEVFRS
Full Sequence
Protein Sequence     Length: 468     Download
MGMRSRHPKA LGFRCYPASH RSLTLVLWSL AALVVVVNFH LLIIHKEEAE SMSTHEIRRS    60
IMRELEVVEE EKFRLSPPRS RRNPRAVRRK GEKKPPTIVD EFLDQSSAVH DMFFPELNTA    120
VDPINGGNDS MYFYYPGRIW LDTDGKPIQA HGGGVLYDKR TNTYFWYGEN KDGKTYKAHS    180
KGADRVDIIG VSCYSSKDLW TWKNEGLVLR GEEKNVTHDL HKSNVLERPK VIYNDRTGKY    240
VMWMHIDDAN YTKASVGVAV SDSPTGPFTY LYSKRPHDCE SRDMTIFKDD DGKAYLIYSS    300
EDNSELHIGP LTDDYLDVTD VMRRLLIAQH REAPALFRHE GTYYMVTSGC TGWAPNTALA    360
HAATSVMGPW ETLGNPCVGG NEVFRSTTFF SQSTFVLPVP GLPGSFIFMA DRWNPSDLID    420
SRYVWLPLTI GGIPDEAADY SFMFPLWSRV SIYWHKRWRL PEEWRDS* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd08990GH43_AXH_like1.0e-21193371193+
cd09004GH43_bXyl3.0e-22192375195+
cd08978GH_F1.0e-44151430291+
cd08985GH43_65.0e-128148430284+
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACG45031.1014671467glycosyl hydrolase, family 43 protein [Zea mays]
GenBankEEE53089.101467299764hypothetical protein OsJ_35850 [Oryza sativa Japonica Group]
RefSeqNP_001066630.1014671466Os12g0406100 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001151925.1014671467glycosyl hydrolase, family 43 protein [Zea mays]
RefSeqXP_002468324.1014671467hypothetical protein SORBIDRAFT_01g043810 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3vt2_F013745245346A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8
PDB3vt2_E013745245346A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8
PDB3vt2_D013745245346A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8
PDB3vt2_C013745245346A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8
PDB3vt2_B013745245346A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8
Transmembrane Domains
StartEnd
2244
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO8017533011684680
JG8646842761824570
JG918498278903670
GO8561533321344650
JG9370722511343840
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_060_00007.3Aquca_060_00007.1Aquca_060_00007.2
Arabidopsis lyrata906305332819
Arabidopsis thalianaAT5G67540.2AT5G67540.1AT3G49880.1
Brachypodium distachyonBradi2g50980.2Bradi1g71160.1Bradi2g50980.1
Brassica rapaBra024441Bra029980Bra036036
Capsella rubellaCarubv10027885mCarubv10019437m
Citrus clementinaCiclev10025553mCiclev10025552mCiclev10025561m
Citrus sinensisorange1.1g011114morange1.1g012300morange1.1g012453m
Cucumis sativusCucsa.366970.1Cucsa.366990.1
Eucalyptus grandisEucgr.I00703.2Eucgr.I00703.1Eucgr.H02307.1
Fragaria vescamrna05759.1-v1.0-hybrid
Glycine maxGlyma05g22470.3Glyma17g17390.3Glyma17g17390.2Glyma17g17390.1Glyma05g22470.6
Glyma05g22470.5Glyma05g22470.4Glyma05g22470.2Glyma01g40190.1Glyma11g05100.1
Gossypium raimondiiGorai.011G214500.1Gorai.008G083400.1Gorai.003G030500.1Gorai.003G030500.2
Linum usitatissimumLus10011543Lus10019280
Malus domesticaMDP0000248963MDP0000503275MDP0000406084
Manihot esculentacassava4.1_032973mcassava4.1_007150mcassava4.1_007066m
Medicago truncatulaMedtr5g015460.1Medtr4g097110.1
Mimulus guttatusmgv1a018781mmgv1a005746m
Oryza sativaLOC_Os12g21789.1LOC_Os12g21789.2LOC_Os01g65720.1
Panicum virgatumPavirv00010178mPavirv00067870mPavirv00058950mPavirv00044467m
Physcomitrella patensPp1s410_9V6.1Pp1s16_243V6.1
Phaseolus vulgarisPhvul.003G234900.1Phvul.002G010600.1
Picea abiesMA_181765g0010
Populus trichocarpaPotri.005G148800.1Potri.005G148800.2
Prunus persicappa005306m
Ricinus communis48021.m00001434138.m00001529661.m000924
Setaria italicaSi001388mSi035531m
Selaginella moellendorffii44066110234
Sorghum bicolorSb03g041630.1
Thellungiella halophilaThhalv10004148mThhalv10010347m
Vitis viniferaGSVIVT01000105001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny