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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb01g047280.1 |
Family | GT47 |
Protein Properties | Length: 515 Molecular Weight: 58396.5 Isoelectric Point: 8.1088 |
Chromosome | Chromosome/Scaffold: 1 Start: 70373283 End: 70374827 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 101 | 441 | 0 |
CRGRYVYIHDLPPRFNADILANCRNWYPWMDMCVYLDNGGLGRPVDNADGVFADEGWYATDHFGLDVIFHRRMKQYDCLTSDSSRAAAVFVPFYAGFDVV QHLWGVNSTAREKDALSLDLVDWLTRRPEWRAMGGRDHFFLSGRTAYDHQRETDSEWGNKLLRLPAVQNMTVLFVEKLPWMSFDFAIPYPTYFHPARDAQ VVEWQRRMRAMKRDWLFTFAGGARDDPDSIRHQLIKQCGSSSFCKLVQCGRNERNCLVPSTFMRVFQGTRFCLQPKGDTMTRRSAFDAIMAGCVPVFFHP DSAYTQYRWHLPEAHDTYSVLIPEADVRAGNVSIEETLRRI |
Full Sequence |
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Protein Sequence Length: 515 Download |
MERTGARSGK RWLPGLLLLA ATSWLLVIYF HLAVLRGPPV VSAPRWSLAE VASDGGGGGD 60 GQRFLLQQEE RLSKLMKAPP AATGNALSAA RDERRRRDDE CRGRYVYIHD LPPRFNADIL 120 ANCRNWYPWM DMCVYLDNGG LGRPVDNADG VFADEGWYAT DHFGLDVIFH RRMKQYDCLT 180 SDSSRAAAVF VPFYAGFDVV QHLWGVNSTA REKDALSLDL VDWLTRRPEW RAMGGRDHFF 240 LSGRTAYDHQ RETDSEWGNK LLRLPAVQNM TVLFVEKLPW MSFDFAIPYP TYFHPARDAQ 300 VVEWQRRMRA MKRDWLFTFA GGARDDPDSI RHQLIKQCGS SSFCKLVQCG RNERNCLVPS 360 TFMRVFQGTR FCLQPKGDTM TRRSAFDAIM AGCVPVFFHP DSAYTQYRWH LPEAHDTYSV 420 LIPEADVRAG NVSIEETLRR IPPDVAEQMT ETVIGLIPRL VYADPRSKLE TLKDAVDVTV 480 EAVIGRVNKL REEMARGQGH LLQKQSGNAG VQQT* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-68 | 105 | 441 | 354 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO17348.1 | 0 | 1 | 494 | 1 | 493 | Hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EAY88513.1 | 0 | 1 | 497 | 1 | 496 | hypothetical protein OsI_09986 [Oryza sativa Indica Group] |
RefSeq | NP_001048944.1 | 0 | 101 | 494 | 28 | 422 | Os03g0144500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147481.1 | 0 | 1 | 498 | 14 | 541 | xyloglucan galactosyltransferase KATAMARI 1 [Zea mays] |
RefSeq | XP_002468518.1 | 0 | 1 | 514 | 1 | 514 | hypothetical protein SORBIDRAFT_01g047280 [Sorghum bicolor] |