| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g048880.1 |
| Family | GH28 |
| Protein Properties | Length: 464 Molecular Weight: 49222.9 Isoelectric Point: 6.4283 |
| Chromosome | Chromosome/Scaffold: 1 Start: 71843095 End: 71846150 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 425 | 0 |
| RDGGAALVVPPGKWLTGPFNLTSCFTLYLDEGAEILASQDMNHWPLIAPLPSYGRGRDEPGPRYINFIGGSNLTDVIITGKNGTINGQGQVWWDKFHAKE LKSTRGHLLELLHSDNIIISNVTFVDAPYWNLHPTYCTNVTISGVTILAPLNSPNTDGIDPDSSTHVKIEDCYIVSGDDCVAVKSGWDEYGIKFNMPSQH IVIRRLTCISPTSAMIALGSEMSGGIRDVRAEDNIAINTESAVRIKSGAGRGGFVKDIFVRGLSLHTMKWVFWMTGNYGQHPDNTSNPNAMPEVTGINYS DVFAENVTTAGRMEGIPNDPYTGICISNVTASLAPNATELQWNCTNVKGV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 464 Download |
| MTPGRSLRPA VAAVLWAASL VLLLAAACAG GGGASGGPGC RKHVAKVTEY GAVGDGRTLN 60 TGAFAKAVAD LSHRARDGGA ALVVPPGKWL TGPFNLTSCF TLYLDEGAEI LASQDMNHWP 120 LIAPLPSYGR GRDEPGPRYI NFIGGSNLTD VIITGKNGTI NGQGQVWWDK FHAKELKSTR 180 GHLLELLHSD NIIISNVTFV DAPYWNLHPT YCTNVTISGV TILAPLNSPN TDGIDPDSST 240 HVKIEDCYIV SGDDCVAVKS GWDEYGIKFN MPSQHIVIRR LTCISPTSAM IALGSEMSGG 300 IRDVRAEDNI AINTESAVRI KSGAGRGGFV KDIFVRGLSL HTMKWVFWMT GNYGQHPDNT 360 SNPNAMPEVT GINYSDVFAE NVTTAGRMEG IPNDPYTGIC ISNVTASLAP NATELQWNCT 420 NVKGVTSNVS PKPCPELGAE GKPCAFPVEE LVIGPPALPK CSY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-23 | 47 | 340 | 309 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-23 | 47 | 404 | 373 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-29 | 47 | 431 | 396 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-32 | 141 | 383 | 248 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-56 | 44 | 347 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001048813.1 | 0 | 8 | 463 | 3 | 458 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151102.1 | 0 | 1 | 463 | 1 | 463 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002303605.1 | 0 | 40 | 462 | 39 | 465 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002468601.1 | 0 | 1 | 463 | 1 | 463 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
| RefSeq | XP_002509850.1 | 0 | 40 | 462 | 48 | 474 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5.00264e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5.00264e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5.00264e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5.00264e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000001 | 77 | 330 | 37 | 291 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
