| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g049320.1 |
| Family | AA3 |
| Protein Properties | Length: 603 Molecular Weight: 66021.6 Isoelectric Point: 11.0392 |
| Chromosome | Chromosome/Scaffold: 1 Start: 72327775 End: 72330000 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA3 | 49 | 595 | 0 |
| VSYYNYIVVGGGTAGCPLAATLSERSRVLLLERGGLPYGSRNVSSEDHFADALADSSPMSPAQRFVSEDGVVNARARVLGGGSCLNAGFYTRASGGYVRA AGWDHRLVNASYRWVERALVFRPAVPQWQRALRQGLLQAGVTPDNGYTLEHVQGTKIGGTIFDRRGRRHTAADFLRRAHPRRLTVFLHATVSRILFRRAE GATKPVAYGVVFTDPMGVQHHVYLRRGGGGAKNEVILAAGTLGSPQLLMLSGVGPRAHLEKHGIRTVHDQPGVGQGVADNPMNSVFVPSPVPVALSLVQV VGVTRFGSFIEGISGSQFGIPLHGRGAAHHAARNFGMFSPMTGQLGTVPPKERTPEAMRRAAEVMRRLDRRAFRGGFILEKVLGPLSTGHIELRSADAHA NPAVTFNYFRDPRDVERCARGIEAIERVVRSRAFSRFTYANHTAMDAAFRRAAGTAYFPVNLLPRHPRDTRTLQQYCRDTVMTIWHYHGGCHVGGVVDRD YRVVGVQGLRVVDSSTFRYSPGTNPQATVMMLGRYMGLRILKDRWIR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 603 Download |
| MPVGHMVCGV AIVFAIVLGS FCITVVTSSP EAQRYNFRFV RHARDAPLVS YYNYIVVGGG 60 TAGCPLAATL SERSRVLLLE RGGLPYGSRN VSSEDHFADA LADSSPMSPA QRFVSEDGVV 120 NARARVLGGG SCLNAGFYTR ASGGYVRAAG WDHRLVNASY RWVERALVFR PAVPQWQRAL 180 RQGLLQAGVT PDNGYTLEHV QGTKIGGTIF DRRGRRHTAA DFLRRAHPRR LTVFLHATVS 240 RILFRRAEGA TKPVAYGVVF TDPMGVQHHV YLRRGGGGAK NEVILAAGTL GSPQLLMLSG 300 VGPRAHLEKH GIRTVHDQPG VGQGVADNPM NSVFVPSPVP VALSLVQVVG VTRFGSFIEG 360 ISGSQFGIPL HGRGAAHHAA RNFGMFSPMT GQLGTVPPKE RTPEAMRRAA EVMRRLDRRA 420 FRGGFILEKV LGPLSTGHIE LRSADAHANP AVTFNYFRDP RDVERCARGI EAIERVVRSR 480 AFSRFTYANH TAMDAAFRRA AGTAYFPVNL LPRHPRDTRT LQQYCRDTVM TIWHYHGGCH 540 VGGVVDRDYR VVGVQGLRVV DSSTFRYSPG TNPQATVMML GRYMGLRILK DRWIRKGAED 600 KH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 7.0e-7 | 433 | 589 | 166 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 3.0e-15 | 55 | 329 | 315 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| COG2303 | BetA | 9.0e-25 | 52 | 592 | 591 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PRK02106 | PRK02106 | 4.0e-27 | 52 | 327 | 329 | + choline dehydrogenase; Validated | ||
| PLN02785 | PLN02785 | 0 | 52 | 592 | 541 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO15286.1 | 0 | 19 | 596 | 24 | 586 | Putative mandelonitrile lyase [Oryza sativa Japonica Group] |
| GenBank | EAY88296.1 | 0 | 19 | 596 | 24 | 586 | hypothetical protein OsI_09753 [Oryza sativa Indica Group] |
| RefSeq | NP_001065107.1 | 0 | 31 | 595 | 33 | 586 | Os10g0524500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002467623.1 | 0 | 13 | 593 | 13 | 580 | hypothetical protein SORBIDRAFT_01g031110 [Sorghum bicolor] |
| RefSeq | XP_002468629.1 | 0 | 1 | 602 | 1 | 602 | hypothetical protein SORBIDRAFT_01g049320 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 37 | 592 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 37 | 592 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 37 | 592 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 37 | 592 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 37 | 592 | 12 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
