| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g002990.1 |
| Family | CBM43 |
| Protein Properties | Length: 177 Molecular Weight: 18673.5 Isoelectric Point: 8.041 |
| Chromosome | Chromosome/Scaffold: 2 Start: 3154747 End: 3155793 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 57 | 140 | 2.9e-34 |
| WCVARPGATQEDLQNALDWACGPGGADCSQLQPGGRCYQPNTLLTHASYAFNIFYQQNGNSDIACNFGGAGALVKRDPSFGSCK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 177 Download |
| MKRKELMIMH GVLILGWFIA SAAAGRFTPQ EKAESVTPIP TLSPPEGNMT FIDGVTWCVA 60 RPGATQEDLQ NALDWACGPG GADCSQLQPG GRCYQPNTLL THASYAFNIF YQQNGNSDIA 120 CNFGGAGALV KRDPSFGSCK FLASETSAAA SSVMLLGRRV CVAMVGASLI ALRLRV* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-23 | 56 | 127 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 8.0e-44 | 56 | 141 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ02781.1 | 0 | 1 | 176 | 1 | 172 | hypothetical protein OsI_24906 [Oryza sativa Indica Group] |
| GenBank | EAZ38703.1 | 0 | 49 | 176 | 1 | 125 | hypothetical protein OsJ_23103 [Oryza sativa Japonica Group] |
| RefSeq | NP_001058896.1 | 0 | 49 | 176 | 1 | 125 | Os07g0149900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001144702.1 | 0 | 26 | 176 | 27 | 177 | hypothetical protein LOC100277738 [Zea mays] |
| RefSeq | XP_002461458.1 | 0 | 1 | 176 | 1 | 176 | hypothetical protein SORBIDRAFT_02g002990 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-20 | 56 | 141 | 12 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
