| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g003640.1 |
| Family | AA4 |
| Protein Properties | Length: 575 Molecular Weight: 62332.1 Isoelectric Point: 6.9346 |
| Chromosome | Chromosome/Scaffold: 2 Start: 4057144 End: 4063533 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA4 | 96 | 339 | 1.7e-23 |
| QEFIDELASFLGDNMTLDYEERSFHGTPQNSFHKAINVPDVVVFPSSQDEVQKIVMACNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMTLMKKIKSLNV EDMDVVVEPGVGWIELNEYLKPYGLFFPLDPGKNLAIVGNCIFTCFEGFKWPGATIGGMCATRCSGSLAVRYGTMRDNVINLRAVLPNGDVVKTGSRARK SAAGYDLARLIIGSEGTLGVITEVTLRLQKLPSHSVVAMCNFKT | |||
| Full Sequence |
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| Protein Sequence Length: 575 Download |
| MATSLLRLSR PRRALPLLPI SSLRQPLSTQ SHAPSPTPSS ARRLPHFLSF LAAAAAAAAA 60 GGATVALCDS GLDHHRVGGK DSTDLVVRGE RKLVPQEFID ELASFLGDNM TLDYEERSFH 120 GTPQNSFHKA INVPDVVVFP SSQDEVQKIV MACNKYKVPI VPYGGATSIE GHTLAPHGGV 180 CIDMTLMKKI KSLNVEDMDV VVEPGVGWIE LNEYLKPYGL FFPLDPGKNL AIVGNCIFTC 240 FEGFKWPGAT IGGMCATRCS GSLAVRYGTM RDNVINLRAV LPNGDVVKTG SRARKSAAGY 300 DLARLIIGSE GTLGVITEVT LRLQKLPSHS VVAMCNFKTI KDAADVAIAT MLSGIQVSRV 360 ELLDEVQIKA INMANGKNLP EVPTLMFEFI GTEAYALEQT LLVQKIANKH HGSDFVFVEE 420 PDAKAELWKI RKEALWAGFA MKPDYEAMIT DVCVPLSRLA ECISTSKRLL DASPLTCLVI 480 AHAGDGNFHT IILFDPSQDD QQKEAERLNH FMVDTALSME GTCTGEHGVG TGKMKYLEKE 540 LGIESLRTMK RIKGALDPNN IMNPGKLIPP HVCI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 1.0e-49 | 133 | 573 | 444 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 3.0e-66 | 326 | 567 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 3.0e-91 | 137 | 566 | 432 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 7.0e-119 | 101 | 570 | 482 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 25 | 574 | 550 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC81560.1 | 0 | 43 | 574 | 52 | 551 | hypothetical protein OsI_24999 [Oryza sativa Indica Group] |
| GenBank | EEE66611.1 | 0 | 67 | 574 | 71 | 548 | hypothetical protein OsJ_23188 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142976.1 | 0 | 1 | 574 | 1 | 555 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | XP_002461502.1 | 0 | 1 | 574 | 1 | 574 | hypothetical protein SORBIDRAFT_02g003640 [Sorghum bicolor] |
| RefSeq | XP_002524111.1 | 0 | 28 | 574 | 23 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 1e-38 | 97 | 568 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 1e-38 | 97 | 568 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 1e-38 | 97 | 568 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 1e-38 | 97 | 568 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 1e-38 | 97 | 568 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG888859 | 277 | 285 | 561 | 0 |
| EX265038 | 342 | 148 | 488 | 0 |
| FL811189 | 260 | 272 | 531 | 0 |
| FL984652 | 255 | 266 | 520 | 0 |
| EX440808 | 348 | 112 | 459 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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