| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g003910.1 |
| Family | CBM43 |
| Protein Properties | Length: 491 Molecular Weight: 52048.2 Isoelectric Point: 5.2388 |
| Chromosome | Chromosome/Scaffold: 2 Start: 4347672 End: 4352129 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 373 | 454 | 4.3e-27 |
| WCALNPNAKDLGKLGANIDYACTFADCTPLGYGSTCNGMDVAGNASYAFNAYYQVQNQKDEACDFQGLALPTETDPSTATCN | |||
| GH17 | 29 | 350 | 0 |
| LGMNWGTQATHPLPPKAVVQVLQDNGIKKVKLFDTDPAAMSALAGTGIEVMVAIPNNMLADLADDAGKAKDWVKRNVRRYDFDGGVTIKYVAVGNEPFLE SYNGSFINVTFPALENIQNALNNAGIGDRIKATVPLNADVYNSPKNNQVPSAGRFRADIAGLMTDMVKFLAKNNAPFTVNIYPFLSLYLNDNFPLDYAFF DGGATPVNDNGVLYTNVFDANFDTLVAALKAVGHGDLPIVVGEVGWPTDGDKHAKASYAERFYAGLLKRLAANTGTPARPNQYTEVYLFGLVDEDAKSVA PGSFERHWGVLRYDGQPKFAMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 491 Download |
| MAARLAAASA ALALALVGMC CAAGPATALG MNWGTQATHP LPPKAVVQVL QDNGIKKVKL 60 FDTDPAAMSA LAGTGIEVMV AIPNNMLADL ADDAGKAKDW VKRNVRRYDF DGGVTIKYVA 120 VGNEPFLESY NGSFINVTFP ALENIQNALN NAGIGDRIKA TVPLNADVYN SPKNNQVPSA 180 GRFRADIAGL MTDMVKFLAK NNAPFTVNIY PFLSLYLNDN FPLDYAFFDG GATPVNDNGV 240 LYTNVFDANF DTLVAALKAV GHGDLPIVVG EVGWPTDGDK HAKASYAERF YAGLLKRLAA 300 NTGTPARPNQ YTEVYLFGLV DEDAKSVAPG SFERHWGVLR YDGQPKFAMD LAGQGRNTML 360 VPAKGVKYLP RAWCALNPNA KDLGKLGANI DYACTFADCT PLGYGSTCNG MDVAGNASYA 420 FNAYYQVQNQ KDEACDFQGL ALPTETDPST ATCNFTIQIQ TGAAAMASLG ARSAGAAALV 480 LALLQLLAMW * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 8.0e-5 | 257 | 342 | 86 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-18 | 373 | 441 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-32 | 373 | 455 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-71 | 29 | 350 | 324 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG29689.1 | 0 | 25 | 470 | 17 | 463 | glucan endo-1,3-beta-glucosidase 5 precursor [Zea mays] |
| DDBJ | BAF20898.2 | 0 | 32 | 460 | 107 | 531 | Os07g0168600 [Oryza sativa Japonica Group] |
| RefSeq | NP_001058984.1 | 0 | 32 | 460 | 28 | 452 | Os07g0168600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130924.1 | 0 | 24 | 470 | 17 | 464 | hypothetical protein LOC100192029 [Zea mays] |
| RefSeq | XP_002459388.1 | 0 | 1 | 490 | 1 | 490 | hypothetical protein SORBIDRAFT_02g003910 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 29 | 351 | 3 | 314 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3ur8_A | 0 | 29 | 351 | 3 | 314 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3ur7_B | 0 | 29 | 351 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 29 | 351 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3f55_D | 0 | 29 | 352 | 2 | 316 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
