| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g004490.1 |
| Family | GH10 |
| Protein Properties | Length: 568 Molecular Weight: 62483.9 Isoelectric Point: 9.3682 |
| Chromosome | Chromosome/Scaffold: 2 Start: 5137761 End: 5141208 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 219 | 479 | 0 |
| MGFPFGNAATKEITELPAYEKWFTSRFTVATFENEMKWYSTEWTQNHEDYGVADKMLSLMQRHGIKVRGHNVFWDDQNSQMKWVMPLSLAQLKAAIQKRL KSVVSRYAGKVIHWDVVNENLHFNFFETKLGPGASAQIFQQVGQLDRNPILFMNEFNTLEQPGDPNPTPAKYVAKMTQIRSYPGNGGLKLGVGLESHFST PNIPYMRSSLDTLAKLKLPMWLTEVDVVKGPNQVKNLEQVLREGYGHPGVNGIVMWAAWHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 568 Download |
| MDSSTHRSIQ CLGDPMKPLY KGGIVQNSEF NSGLMGWSTY RNMKAGVSSS ASGNKFAVVH 60 GAGSSAVASS GKLLPSHSVY QRVQMQGDRH YSLSAWLQVS SSNGTTSSAH VRAIIKSPNG 120 ERVIAGAIDA KSGCWSMLKG GMTSDSSGHA EIYFESHAAV DIWVDSVSLQ PFTFDEWDAH 180 ARRSAAKSRR RTVKVVVAMG AADGKPIAHA NVSIELLRMG FPFGNAATKE ITELPAYEKW 240 FTSRFTVATF ENEMKWYSTE WTQNHEDYGV ADKMLSLMQR HGIKVRGHNV FWDDQNSQMK 300 WVMPLSLAQL KAAIQKRLKS VVSRYAGKVI HWDVVNENLH FNFFETKLGP GASAQIFQQV 360 GQLDRNPILF MNEFNTLEQP GDPNPTPAKY VAKMTQIRSY PGNGGLKLGV GLESHFSTPN 420 IPYMRSSLDT LAKLKLPMWL TEVDVVKGPN QVKNLEQVLR EGYGHPGVNG IVMWAAWHAK 480 GCYVMCLTDN SFKNLPVGDV VDKLIAEWKT HRASATTDRD GAVELDLPLG EYKFTVRHPS 540 LKAAAVQTVT VDDTSSSASE FTINVKS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 6.0e-28 | 224 | 449 | 239 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-40 | 221 | 474 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-73 | 254 | 501 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM08566.1 | 0 | 16 | 566 | 1 | 540 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
| GenBank | EEC66792.1 | 0 | 8 | 566 | 30 | 577 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
| GenBank | EEE50812.1 | 0 | 16 | 566 | 1 | 532 | hypothetical protein OsJ_31205 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064415.1 | 0 | 8 | 566 | 30 | 577 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002461545.1 | 0 | 1 | 567 | 1 | 567 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 5e-27 | 223 | 501 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyz_B | 9e-20 | 219 | 475 | 43 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 9e-20 | 219 | 475 | 43 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1e0v_A | 3e-17 | 208 | 449 | 1 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 4e-17 | 208 | 449 | 1 | 243 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL788487 | 246 | 287 | 532 | 0 |
| FL816029 | 262 | 161 | 422 | 0 |
| FL833802 | 242 | 210 | 451 | 0 |
| FL746832 | 231 | 196 | 426 | 0 |
| FL746832 | 29 | 420 | 448 | 0.00007 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
