| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g007470.1 |
| Family | GH28 |
| Protein Properties | Length: 500 Molecular Weight: 54101.1 Isoelectric Point: 6.8345 |
| Chromosome | Chromosome/Scaffold: 2 Start: 9466295 End: 9469731 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 90 | 427 | 0 |
| AKKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAVILGSTDSSDWPVIDALPSYGRGRELPGKRHQSLIFGSNLTDVIITGSNGTIDGQGAVWWDWFHNH TLNYTRPPLVELMYSTRVVISNLTFINSPFWNIHPVYCSQVLAQHLTILAPISSPNTDGIDPDSSTNVCIEDCYIRNGDDIVVIKSGWDEYGISFAHPSS NISIRNITGQTRNSAGLAFGSEMSGGISDVRAEGIRIVNSVHGIRIKTAPGRGGYVKNVYVADVSFDNVSIAIRITGNYGEHPDDRYNKSALPTISNITI KDVVGVNIGVAGMLQGIPGDNFSNICLSNVSLSVRSTD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 500 Download |
| MLSSSRKMSR SATVRGAIIS YWIFQVLLVF TTIVAQTQWA SVWGMYCEDL TASVERPHSA 60 SITDFGAVGD GATLNTKAFQ NALFYLNSFA KKGGAQLFVP AGRWLTGSFS LISHLTLSLD 120 KDAVILGSTD SSDWPVIDAL PSYGRGRELP GKRHQSLIFG SNLTDVIITG SNGTIDGQGA 180 VWWDWFHNHT LNYTRPPLVE LMYSTRVVIS NLTFINSPFW NIHPVYCSQV LAQHLTILAP 240 ISSPNTDGID PDSSTNVCIE DCYIRNGDDI VVIKSGWDEY GISFAHPSSN ISIRNITGQT 300 RNSAGLAFGS EMSGGISDVR AEGIRIVNSV HGIRIKTAPG RGGYVKNVYV ADVSFDNVSI 360 AIRITGNYGE HPDDRYNKSA LPTISNITIK DVVGVNIGVA GMLQGIPGDN FSNICLSNVS 420 LSVRSTDPWN CSLVEGYSNS VSPEVCEQLR TSPGPGQICY GSNYPAAAAQ PQPQPQPLQK 480 SSASRLVNPF LSISWFLCR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-24 | 52 | 396 | 359 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-26 | 56 | 394 | 354 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-28 | 62 | 396 | 347 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-32 | 158 | 432 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-53 | 60 | 414 | 378 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR35653.1 | 0 | 1 | 499 | 1 | 490 | unknown [Zea mays] |
| GenBank | EEC81792.1 | 0 | 1 | 491 | 23 | 499 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
| GenBank | EEE66877.1 | 0 | 1 | 491 | 23 | 499 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059282.1 | 0 | 8 | 491 | 2 | 439 | Os07g0245200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459610.1 | 0 | 1 | 499 | 1 | 499 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3.99931e-42 | 48 | 418 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3.99931e-42 | 48 | 418 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3.99931e-42 | 48 | 418 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3.99931e-42 | 48 | 418 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 9e-21 | 104 | 426 | 52 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
