| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g010990.1 |
| Family | CBM22 |
| Protein Properties | Length: 1099 Molecular Weight: 123422 Isoelectric Point: 7.2169 |
| Chromosome | Chromosome/Scaffold: 2 Start: 17634744 End: 17640655 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 387 | 520 | 2.3e-29 |
| IIKNPHFDDGLKNWSGRGCNICRHEFTAYGDVRPLNGSYFASATGRVHNWNGIQQEITGRVQRKVLYEISSAVRIFGSANDTEVRATLWVQEYGRERYVG LAKNQTSDKQWTHLKGKFLLHAPFTKAVIFIEGP | |||
| CBM22 | 49 | 186 | 4.5e-31 |
| NIVSNSDFSEGLHLWQPNSCHAFIAVEGSGYHYGVRPHSGSTYAVLTHRTQSWQGLEQDITEKVTLGTEYFVAAYVRVHGEVHEPIGVQVTLKLEEGSST NYLSIARILASQERWEKIEGSFNLTTLPRRLVFYLEGP | |||
| CBM22 | 216 | 354 | 1.4e-31 |
| NIILNYDFSKGLHPWNPICCHAYVASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSIGTAYVVSAFVRVDGNVQGQVEVKGTLRLQNADGS THYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGP | |||
| CBM22 | 555 | 696 | 8.6e-39 |
| NLLHNNAFTRGLAGWSPMGSCRLSIQTEAHHMLSSILKDRASQKHISGRYILATNRTDVWMGPSQVITDKLRLHVTYRVSAWVRVGSGGHGRHHVNVCLA VDNNQWVNGGQVEADGDQWYEIKGAFKLEKQPSKVTAYVQGP | |||
| GH10 | 754 | 1035 | 0 |
| QTENSFPFGSCIARHNIENEDLAEFFVKNFNWAVFENELKWYHTEAEQGRLNYKDSDELLEFCEKHKIQVRGHCLFWEVEDAVQPWVRSLQGHHLMAAIQ NRLQSLLSRYRGRFRHHDVNNEMLHGSFYEDRLGRDIRAYMFREAHKLDPSAVLFVNDYNVEDGCDTKSTPEKFVEQVVDLQERGAPVGGIGVQGHISHP VGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAG | |||
| Full Sequence |
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| Protein Sequence Length: 1099 Download |
| MRRRCGWLSS LFRPRRAGRS LPQPDPQGPD SEPKAVDKRS ASDEVTMENI VSNSDFSEGL 60 HLWQPNSCHA FIAVEGSGYH YGVRPHSGST YAVLTHRTQS WQGLEQDITE KVTLGTEYFV 120 AAYVRVHGEV HEPIGVQVTL KLEEGSSTNY LSIARILASQ ERWEKIEGSF NLTTLPRRLV 180 FYLEGPPPGV DLLIDSVTIS YKKTEGSASS IGGTENIILN YDFSKGLHPW NPICCHAYVA 240 SQWSGFLDGI RGNSGENYAV VSKRTEHWQG LEQDITNQVS IGTAYVVSAF VRVDGNVQGQ 300 VEVKGTLRLQ NADGSTHYNP VGSVVASKEK WNKLEGSFSL TNMPKNVVFY LEGPPAGVDL 360 VIDSVTITCS RHKQSKEVKV PSGAETIIKN PHFDDGLKNW SGRGCNICRH EFTAYGDVRP 420 LNGSYFASAT GRVHNWNGIQ QEITGRVQRK VLYEISSAVR IFGSANDTEV RATLWVQEYG 480 RERYVGLAKN QTSDKQWTHL KGKFLLHAPF TKAVIFIEGP PAGIDILVDG LVLSPARKLQ 540 AAPCPKIQNV QYGTNLLHNN AFTRGLAGWS PMGSCRLSIQ TEAHHMLSSI LKDRASQKHI 600 SGRYILATNR TDVWMGPSQV ITDKLRLHVT YRVSAWVRVG SGGHGRHHVN VCLAVDNNQW 660 VNGGQVEADG DQWYEIKGAF KLEKQPSKVT AYVQGPPPGV DLRVMDFQIY PVDRKARFEY 720 LKDKTDKVRK RDVVLKFQGS NAVNLLGSSV RIQQTENSFP FGSCIARHNI ENEDLAEFFV 780 KNFNWAVFEN ELKWYHTEAE QGRLNYKDSD ELLEFCEKHK IQVRGHCLFW EVEDAVQPWV 840 RSLQGHHLMA AIQNRLQSLL SRYRGRFRHH DVNNEMLHGS FYEDRLGRDI RAYMFREAHK 900 LDPSAVLFVN DYNVEDGCDT KSTPEKFVEQ VVDLQERGAP VGGIGVQGHI SHPVGEIICD 960 SLDKLAILGL PIWITELDVT AENEHIRADD LEVFLREAFA HPAVGGIILW GFWEMFMFRE 1020 HAHLVDADGT INEAGRRYLA LKQEWLTRTN GNVDRQGEFK FRGYHGSYTV EVDTPSGKVA 1080 RSFVVDKDSP VQVITLNV* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-15 | 387 | 522 | 138 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 2.0e-18 | 216 | 356 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 8.0e-41 | 746 | 1012 | 291 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 5.0e-72 | 756 | 1042 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 5.0e-76 | 792 | 1037 | 267 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ03745.1 | 0 | 34 | 1098 | 17 | 1082 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
| GenBank | EAZ03745.1 | 0 | 196 | 714 | 12 | 523 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
| GenBank | EAZ39688.1 | 0 | 34 | 1098 | 17 | 1082 | hypothetical protein OsJ_24125 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059561.1 | 0 | 1 | 1098 | 1 | 1101 | Os07g0456700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459803.1 | 0 | 1 | 1098 | 1 | 1098 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 9e-30 | 747 | 1016 | 25 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 9e-30 | 747 | 1016 | 25 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 3e-29 | 761 | 1032 | 18 | 289 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 3e-29 | 761 | 1032 | 18 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 6e-29 | 761 | 1032 | 18 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO850973 | 328 | 680 | 1007 | 0 |
| GT037746 | 297 | 803 | 1099 | 0 |
| EB404048 | 267 | 199 | 465 | 0 |
| EB404048 | 266 | 38 | 296 | 0 |
| EB404048 | 258 | 383 | 635 | 2e-19 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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