y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb02g012320.1 |
Family | GH14 |
Protein Properties | Length: 470 Molecular Weight: 53242.1 Isoelectric Point: 4.9168 |
Chromosome | Chromosome/Scaffold: 2 Start: 20582813 End: 20592033 |
Description | beta-amylase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 35 | 452 | 0 |
YVMLPLGVVNGNGEVVDADELVGQLRVLKAAGVDGVMVDCWWGNVEAHRPQEYNWTGYRRLFQMIRELKLKLQVVMSFHECGGNVGDDISIPLPHWVIEI GRSNPDIYFTDRAGRRNTECLSWGIDKERVLQGRTAVEVYFDFMRSFRVEFDEYFEDGIISEIEIGLGACGELRYPSYPAKHGWKYPGIGEFQCYDRYLQ KSLRKAAEARGHTIWARGPDNAGHYNSEPNLTGFFCDGGDYDSYYGRFFLSWYSQTLVDHADRVLMLARLAFEGSNIAVKVSGVHWWYKTASHAAELTAG FYNPCNRDGYAPIAAVLKKYDAALNFTCVELRTMDQHEVYPEAFADPEGLVWQVLNAAWDAGIQVASENALPCYDRDGFNKILENAKPLNDPDGRHLFGF TYLRLSNVLFERPNFFEF |
Full Sequence |
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Protein Sequence Length: 470 Download |
MDPAAEDGPV AKQVPDVAPR PPERDFAGTP YVPVYVMLPL GVVNGNGEVV DADELVGQLR 60 VLKAAGVDGV MVDCWWGNVE AHRPQEYNWT GYRRLFQMIR ELKLKLQVVM SFHECGGNVG 120 DDISIPLPHW VIEIGRSNPD IYFTDRAGRR NTECLSWGID KERVLQGRTA VEVYFDFMRS 180 FRVEFDEYFE DGIISEIEIG LGACGELRYP SYPAKHGWKY PGIGEFQCYD RYLQKSLRKA 240 AEARGHTIWA RGPDNAGHYN SEPNLTGFFC DGGDYDSYYG RFFLSWYSQT LVDHADRVLM 300 LARLAFEGSN IAVKVSGVHW WYKTASHAAE LTAGFYNPCN RDGYAPIAAV LKKYDAALNF 360 TCVELRTMDQ HEVYPEAFAD PEGLVWQVLN AAWDAGIQVA SENALPCYDR DGFNKILENA 420 KPLNDPDGRH LFGFTYLRLS NVLFERPNFF EFERFVKRMH GEAVLDLQV* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00197 | PLN00197 | 9.0e-149 | 32 | 459 | 436 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 6.0e-166 | 32 | 459 | 432 | + beta-amylase | ||
PLN02905 | PLN02905 | 0 | 12 | 469 | 458 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 14 | 462 | 449 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 31 | 462 | 438 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29023.1 | 0 | 1 | 469 | 96 | 567 | beta-amylase [Zea mays] |
GenBank | EEC85090.1 | 0 | 12 | 469 | 193 | 651 | hypothetical protein OsI_32458 [Oryza sativa Indica Group] |
GenBank | EEE70265.1 | 0 | 12 | 469 | 192 | 650 | hypothetical protein OsJ_30408 [Oryza sativa Japonica Group] |
RefSeq | NP_001063976.1 | 0 | 12 | 469 | 75 | 533 | Os09g0569200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459849.1 | 0 | 1 | 469 | 1 | 469 | hypothetical protein SORBIDRAFT_02g012320 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1byd_A | 0 | 31 | 462 | 11 | 444 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 1byc_A | 0 | 31 | 462 | 11 | 444 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 1byb_A | 0 | 31 | 462 | 11 | 444 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 1bya_A | 0 | 31 | 462 | 11 | 444 | A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With Beta-Maltose And Maltal: Active Site Components And Their Apparent Role In Catalysis |
PDB | 1wdp_A | 0 | 31 | 462 | 11 | 444 | A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With Beta-Maltose And Maltal: Active Site Components And Their Apparent Role In Catalysis |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV021150 | 292 | 117 | 408 | 0 |
CO447286 | 289 | 109 | 397 | 0 |
JG814958 | 249 | 63 | 311 | 0 |
FF359578 | 263 | 71 | 333 | 0 |
DY402216 | 244 | 136 | 379 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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