y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb02g012560.1 |
Family | CE8 |
Protein Properties | Length: 429 Molecular Weight: 45382 Isoelectric Point: 8.0038 |
Chromosome | Chromosome/Scaffold: 2 Start: 21531195 End: 21532887 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 101 | 393 | 0 |
LTVDHKGCGNYTRLQKAVDAVPDYAAARTLIAVDAGVYAEKVVVWSNKTGVTLQGRGNLNTTIVWNDTANSSGGTFYSATVAVLAANFVAYNVSVQNTAA PADPGGSGGQAVALRVAGDQAAFYWCGFYSSQDTLLDEQGRHLFRGCYVEGSIDFIFGNARSLYLGCTISSVANAAAGGTVTGSVTAHGRASPAEKTGFA FVGCTVVGTGQVWLGRAWGPYATVVFARTYLSAVVAPGAWNDWNDPARQQSVFFGEYDCTGPGASGGTVQRVAYARQLDQRQAAPFMDVSYID |
Full Sequence |
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Protein Sequence Length: 429 Download |
MRRLLRRTTR STGRAGAKAP LMLWWAAPAI CSALLAVLLA SRSSFYLRQP ASPPYTSPGA 60 EAEAEAEAEE GRHHHHRRRA CDDQARWVAK MASLHNATLV LTVDHKGCGN YTRLQKAVDA 120 VPDYAAARTL IAVDAGVYAE KVVVWSNKTG VTLQGRGNLN TTIVWNDTAN SSGGTFYSAT 180 VAVLAANFVA YNVSVQNTAA PADPGGSGGQ AVALRVAGDQ AAFYWCGFYS SQDTLLDEQG 240 RHLFRGCYVE GSIDFIFGNA RSLYLGCTIS SVANAAAGGT VTGSVTAHGR ASPAEKTGFA 300 FVGCTVVGTG QVWLGRAWGP YATVVFARTY LSAVVAPGAW NDWNDPARQQ SVFFGEYDCT 360 GPGASGGTVQ RVAYARQLDQ RQAAPFMDVS YIDGNQWAVP PLLPPMQGAA GEDIIVSAEF 420 SHGQAGIM* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 4.0e-92 | 99 | 400 | 309 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-96 | 99 | 397 | 299 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-98 | 100 | 401 | 303 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-110 | 86 | 397 | 330 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 9.0e-127 | 96 | 400 | 307 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30191.1 | 0 | 81 | 400 | 86 | 401 | unnamed protein product [Vitis vinifera] |
GenBank | EEC85099.1 | 0 | 74 | 409 | 160 | 501 | hypothetical protein OsI_32473 [Oryza sativa Indica Group] |
RefSeq | NP_001063991.1 | 0 | 74 | 409 | 62 | 403 | Os09g0571100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002264941.1 | 0 | 88 | 400 | 2 | 311 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002459865.1 | 0 | 11 | 428 | 11 | 428 | hypothetical protein SORBIDRAFT_02g012560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 103 | 397 | 7 | 303 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 1.99965e-42 | 101 | 404 | 9 | 314 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 0.00000000001 | 97 | 404 | 1 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 0.00000000001 | 97 | 404 | 1 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 0.00000000001 | 97 | 404 | 1 | 342 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |