y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb02g025460.1 |
Family | CE8 |
Protein Properties | Length: 629 Molecular Weight: 67687.5 Isoelectric Point: 8.2796 |
Chromosome | Chromosome/Scaffold: 2 Start: 60346734 End: 60348832 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 314 | 610 | 0 |
NVVVAKDGSGKFKTINEALAAMPKTYDGRYVIQVKEGVYEEYVTITRTMKNVTFLGDGSKKSIVTGKKSFADGITTFKTATFTAQADGFMAIGMGFQNTA GAEKHQAVALLVQSDKSIFLNCKMEGFQDTLYAHSKAQFYRNCIISGTVDFIFGDAAAVFQNCILILRRPMDNQQNIVTAQGRADAREATGFVLQKCEFQ AEAALRDAGKPAIRNYLGRPWRECSRTVFMESEIPDFIDKAGYLPWNGDFGLKTLWYGEFGNTGPGANTAGRVNWPGFKKVISKADASKFTVENFLH |
Full Sequence |
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Protein Sequence Length: 629 Download |
MSSSAFGDFG PLTERRKAEN ARKQRRRIMI AAGTVTIIIL LIVMGSAAVA YNGKKSSGDG 60 GGHKSSSSKG SSSPAKGKSD SDSESESESE SASDSKTDLK AVSKSIKAMC SQTDYTAACE 120 KSLGKAANAS SSSPKDIVRS AVEVIGDAIS QAFDRADLIL SNDPRVKAAV ADCKEVFADA 180 KDDLNSTLKG VDDKDGISKQ SYQLRIWLSA VIANMETCID GFPDDEFKAK VKESFTDGKE 240 LTSNAMALIE KGSSLLSVLK GGSKRRLLEE EEEGAASASQ AGPALDKDGI PEWVPDGERR 300 VLKGGGFKNT LKANVVVAKD GSGKFKTINE ALAAMPKTYD GRYVIQVKEG VYEEYVTITR 360 TMKNVTFLGD GSKKSIVTGK KSFADGITTF KTATFTAQAD GFMAIGMGFQ NTAGAEKHQA 420 VALLVQSDKS IFLNCKMEGF QDTLYAHSKA QFYRNCIISG TVDFIFGDAA AVFQNCILIL 480 RRPMDNQQNI VTAQGRADAR EATGFVLQKC EFQAEAALRD AGKPAIRNYL GRPWRECSRT 540 VFMESEIPDF IDKAGYLPWN GDFGLKTLWY GEFGNTGPGA NTAGRVNWPG FKKVISKADA 600 SKFTVENFLH AQPWIDPTGT PVKYDLFT* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02990 | PLN02990 | 1.0e-142 | 99 | 621 | 547 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 3.0e-146 | 103 | 621 | 536 | + pectinesterase | ||
PLN02468 | PLN02468 | 2.0e-147 | 100 | 626 | 531 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 1.0e-168 | 314 | 609 | 296 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 0 | 5 | 627 | 629 | + Putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN34013.1 | 0 | 1 | 628 | 1 | 630 | unknown [Zea mays] |
GenBank | EAZ44838.1 | 0 | 96 | 628 | 160 | 690 | hypothetical protein OsJ_29475 [Oryza sativa Japonica Group] |
RefSeq | NP_001063246.1 | 0 | 3 | 628 | 2 | 617 | Os09g0433700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001132793.1 | 0 | 1 | 628 | 1 | 623 | hypothetical protein LOC100194282 [Zea mays] |
RefSeq | XP_002462429.1 | 0 | 1 | 628 | 1 | 628 | hypothetical protein SORBIDRAFT_02g025460 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 309 | 626 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 311 | 619 | 1 | 308 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-21 | 314 | 580 | 5 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-21 | 314 | 580 | 5 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-21 | 314 | 580 | 5 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |