| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g025730.1 |
| Family | GH28 |
| Protein Properties | Length: 519 Molecular Weight: 56425.4 Isoelectric Point: 9.5175 |
| Chromosome | Chromosome/Scaffold: 2 Start: 60705452 End: 60709565 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 128 | 480 | 0 |
| AIAERGGGRLTVPAGRWLTAPFNLTSHMILFLAAGAEILGIQDERYWPLMSPLPSYGYGREHKGPRYGSLIHGQDLKDVTITGHNGTINGQGQSWWVKFR RKLLNHTRGPLVQLMRSSDIIISNITLRDSPFWTLHTYDCKNVTISETTILAPIAGAPNTDGIDPDSCENVVIKNCYISVGDDGIAIKSGWDQYGIAYGR PSANIVIQNVVIRSMVSAGVSIGSEMSGGVSDVLVENVHVWDSRRGVRIKTAPGRGAYVTNIVYRNITLENVRVGIVIKTDYNEHPDEGFDPKAVPTIGN ISYTSIHGHRVRVPVRIQGSAEIPVKNVTFHDMSIGIVDKKHHVFQCSFVQGQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 519 Download |
| MLETAAAASS PRAAAAAVAA GAAAVVSSPR RGGGAAHHHR RWGPSSIRAY HLLLAFWLVG 60 FALVVVWQTT SAGRVRLYTR PPMPKRAAAS LSLGQWVASP PVYDLREFGA VGDGRTVNTA 120 AFESAIAAIA ERGGGRLTVP AGRWLTAPFN LTSHMILFLA AGAEILGIQD ERYWPLMSPL 180 PSYGYGREHK GPRYGSLIHG QDLKDVTITG HNGTINGQGQ SWWVKFRRKL LNHTRGPLVQ 240 LMRSSDIIIS NITLRDSPFW TLHTYDCKNV TISETTILAP IAGAPNTDGI DPDSCENVVI 300 KNCYISVGDD GIAIKSGWDQ YGIAYGRPSA NIVIQNVVIR SMVSAGVSIG SEMSGGVSDV 360 LVENVHVWDS RRGVRIKTAP GRGAYVTNIV YRNITLENVR VGIVIKTDYN EHPDEGFDPK 420 AVPTIGNISY TSIHGHRVRV PVRIQGSAEI PVKNVTFHDM SIGIVDKKHH VFQCSFVQGQ 480 VIGYVFPVPC KNLDLYDERR ELVKQSTLQN ISDIDYSF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 7.0e-26 | 99 | 435 | 358 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-29 | 90 | 462 | 391 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 6.0e-30 | 83 | 490 | 422 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-42 | 198 | 468 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-63 | 52 | 427 | 399 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84640.1 | 0 | 32 | 518 | 36 | 526 | hypothetical protein OsI_31518 [Oryza sativa Indica Group] |
| GenBank | EEE69791.1 | 0 | 93 | 518 | 1 | 426 | hypothetical protein OsJ_29512 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063274.1 | 0 | 32 | 518 | 36 | 526 | Os09g0439400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002277239.1 | 0 | 37 | 518 | 13 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002460269.1 | 0 | 1 | 518 | 1 | 518 | hypothetical protein SORBIDRAFT_02g025730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 7.00649e-44 | 104 | 462 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 7.00649e-44 | 104 | 462 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 7.00649e-44 | 104 | 462 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 7.00649e-44 | 104 | 462 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-18 | 144 | 462 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
