| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g028280.1 |
| Family | GH28 |
| Protein Properties | Length: 463 Molecular Weight: 50489.5 Isoelectric Point: 7.5359 |
| Chromosome | Chromosome/Scaffold: 2 Start: 63486078 End: 63488269 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 387 | 0 |
| VDACAAAGGGRVLLPAPGDYLTATVHLRSRVVLDVPPGARLLGGTRQADYPPESRRWYVVLAENTTGAGVTGGGEINGQGGAFVVTPSEVKNVMVSWNAT GDCLGDECRPRLVGFIDSKDVKIHDITLNKPAYWCLHLVRCDNTVIHNVSIFGDLNSPNNDGIDIEDSNNTVITDCHIDTGDDAICPKSTTGPVYNLTAT NSWIRTKSCAIKFGSASFFDFKRLVFDNITIVDAHRGLGMQIRDGGNVSDVMFSNIKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIRFINISS VSENGIFLAGSKHGLLRNLKFKNIDLTYKRWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 463 Download |
| MASPPLQLAA APLLLLLLLL LVVVPGTGSS RVFSVADYGA AGDGSHYDTA AIQATVDACA 60 AAGGGRVLLP APGDYLTATV HLRSRVVLDV PPGARLLGGT RQADYPPESR RWYVVLAENT 120 TGAGVTGGGE INGQGGAFVV TPSEVKNVMV SWNATGDCLG DECRPRLVGF IDSKDVKIHD 180 ITLNKPAYWC LHLVRCDNTV IHNVSIFGDL NSPNNDGIDI EDSNNTVITD CHIDTGDDAI 240 CPKSTTGPVY NLTATNSWIR TKSCAIKFGS ASFFDFKRLV FDNITIVDAH RGLGMQIRDG 300 GNVSDVMFSN IKMSTRYYHP LWWGRAEPIY ITTCPRHPDS KEGTISDIRF INISSVSENG 360 IFLAGSKHGL LRNLKFKNID LTYKRWTNYT GGLYDYRPGC QKMVKHKTGG MMLEHISGLE 420 IDNVRMRWAR GSLKGWNVNP ILFRPSTIDK LSFHDWQSVD VQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-17 | 26 | 384 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 7.0e-17 | 29 | 250 | 226 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 4.0e-18 | 29 | 381 | 387 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-19 | 99 | 383 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-48 | 29 | 314 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84787.1 | 0 | 31 | 461 | 25 | 455 | hypothetical protein OsI_31840 [Oryza sativa Indica Group] |
| GenBank | EEE69946.1 | 0 | 31 | 461 | 25 | 454 | hypothetical protein OsJ_29824 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063526.1 | 0 | 31 | 461 | 25 | 450 | Os09g0487600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148969.1 | 0 | 26 | 462 | 21 | 457 | polygalacturonase [Zea mays] |
| RefSeq | XP_002462564.1 | 0 | 31 | 462 | 31 | 462 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-16 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-16 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-16 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-16 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000000009 | 22 | 313 | 146 | 487 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
