| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g028740.1 |
| Family | CE8 |
| Protein Properties | Length: 320 Molecular Weight: 34423.8 Isoelectric Point: 5.9625 |
| Chromosome | Chromosome/Scaffold: 2 Start: 63894544 End: 63895607 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 7 | 304 | 0 |
| DVVVAADGSGDYSSVSAAIAAAPLKSNKRHVIHIKKGLYKEFVILGEDAWNVTLIGDGMDATVISGSRCCADGFHTPQTAVLTVLGRGFIARDLRVENTA GPRKELGQAVALLSNSDQSVVFRCALRGYQDTLYAELGRQFYRECKISGTVDFIFGDAAAVFQNCDILARLPIQGQQNTLTAEGRDKPDSNGGFCFQSCT VAADDDLAKASGVETYLGRPWKAYSRVIFMKSTISNVRHAKGWLPWEHAAPPDTIYYAEYDNDGPGAAVGGRVKWSGFHTIQDAAEAINFTVEKFING | |||
| Full Sequence |
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| Protein Sequence Length: 320 Download |
| MATVPVDVVV AADGSGDYSS VSAAIAAAPL KSNKRHVIHI KKGLYKEFVI LGEDAWNVTL 60 IGDGMDATVI SGSRCCADGF HTPQTAVLTV LGRGFIARDL RVENTAGPRK ELGQAVALLS 120 NSDQSVVFRC ALRGYQDTLY AELGRQFYRE CKISGTVDFI FGDAAAVFQN CDILARLPIQ 180 GQQNTLTAEG RDKPDSNGGF CFQSCTVAAD DDLAKASGVE TYLGRPWKAY SRVIFMKSTI 240 SNVRHAKGWL PWEHAAPPDT IYYAEYDNDG PGAAVGGRVK WSGFHTIQDA AEAINFTVEK 300 FINGNDWLPG TGVDYKPGL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 1.0e-121 | 14 | 319 | 307 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 2.0e-122 | 14 | 315 | 303 | + pectinesterase | ||
| PLN02468 | PLN02468 | 8.0e-126 | 14 | 319 | 306 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 1.0e-133 | 14 | 319 | 307 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 7.0e-154 | 14 | 305 | 293 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK92470.1 | 0 | 4 | 319 | 212 | 526 | unknown [Populus trichocarpa] |
| GenBank | EAZ07184.1 | 0 | 4 | 319 | 231 | 558 | hypothetical protein OsI_29430 [Oryza sativa Indica Group] |
| RefSeq | NP_001061940.1 | 0 | 4 | 319 | 231 | 555 | Os08g0450100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002326321.1 | 0 | 4 | 319 | 204 | 518 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002462596.1 | 0 | 1 | 319 | 1 | 319 | hypothetical protein SORBIDRAFT_02g028740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 7 | 319 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 2 | 319 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 3e-23 | 7 | 282 | 32 | 345 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 5e-22 | 18 | 309 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 5e-22 | 18 | 309 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX673765 | 287 | 32 | 315 | 0 |
| DT605043 | 272 | 38 | 308 | 0 |
| DY361529 | 278 | 42 | 319 | 0 |
| EH691610 | 278 | 16 | 293 | 0 |
| EH695820 | 276 | 44 | 319 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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