| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g029080.1 |
| Family | CBM43 |
| Protein Properties | Length: 484 Molecular Weight: 52415.9 Isoelectric Point: 8.755 |
| Chromosome | Chromosome/Scaffold: 2 Start: 64242199 End: 64246356 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 388 | 475 | 1.2e-27 |
| WCLLSAAASNKLNETAVGNALTYACGQGNGTCDAIQPGKNCYMPNTTVAHASYAFNSYWQQFRKIGATCYFNNLAEQTIKDPSHGSCK | |||
| GH17 | 37 | 361 | 0 |
| LGVNYGRVADDIPSPRRSVELLRAAGAGSVKIYDANPGVLRALAGTRWPVSIMVPNEIIPDLAASVAAADRWVAKNLVPYYPATRVKFLLVGNEILSDHS IANSTWPRLVPAMENIHRSLRKRGISSVKIGTTLAMDALADGAFPRPPSAATFRADIAEAVVRPLLHFLNGTNSYYFVDAYPYFVWADNNLTVSLDYALF QGGRLRYVDPGTRLTYTNLLDEMLDAVVIAMAKLGYGHVKLAIAETGWPNGCDYDQIGGNVHNAAIYNRNLAARMVKNPGTPVRPGAKMPVFVFSLYNED LKPGPGTERHWGLYYANGTAVYEID | |||
| Full Sequence |
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| Protein Sequence Length: 484 Download |
| MAVSMAAPPL LTLPFLFLLF ATVACRGAYG ASGGYGLGVN YGRVADDIPS PRRSVELLRA 60 AGAGSVKIYD ANPGVLRALA GTRWPVSIMV PNEIIPDLAA SVAAADRWVA KNLVPYYPAT 120 RVKFLLVGNE ILSDHSIANS TWPRLVPAME NIHRSLRKRG ISSVKIGTTL AMDALADGAF 180 PRPPSAATFR ADIAEAVVRP LLHFLNGTNS YYFVDAYPYF VWADNNLTVS LDYALFQGGR 240 LRYVDPGTRL TYTNLLDEML DAVVIAMAKL GYGHVKLAIA ETGWPNGCDY DQIGGNVHNA 300 AIYNRNLAAR MVKNPGTPVR PGAKMPVFVF SLYNEDLKPG PGTERHWGLY YANGTAVYEI 360 DLTGRRPLWS YPPLPAPENN TPYKGPIWCL LSAAASNKLN ETAVGNALTY ACGQGNGTCD 420 AIQPGKNCYM PNTTVAHASY AFNSYWQQFR KIGATCYFNN LAEQTIKDPS HGSCKFPSSL 480 ESP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0004 | 273 | 353 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 3.0e-16 | 388 | 462 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-33 | 388 | 476 | 89 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-81 | 43 | 361 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28576.1 | 0 | 149 | 483 | 1 | 335 | unknown [Zea mays] |
| GenBank | EEC84834.1 | 0 | 4 | 481 | 3 | 477 | hypothetical protein OsI_31928 [Oryza sativa Indica Group] |
| RefSeq | NP_001063586.1 | 0 | 4 | 481 | 3 | 480 | Os09g0502200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149815.1 | 0 | 23 | 483 | 19 | 479 | glucan endo-1,3-beta-glucosidase A6 [Zea mays] |
| RefSeq | XP_002462618.1 | 0 | 1 | 483 | 1 | 483 | hypothetical protein SORBIDRAFT_02g029080 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 37 | 362 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 37 | 362 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 37 | 362 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 37 | 362 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1ghs_B | 0 | 37 | 362 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
