PlantCAZyme

CAZyme Information

Basic Information
Species	Sorghum bicolor
Cazyme ID	Sb02g032885.1
Family	GH100
Protein Properties	Length: 679 Molecular Weight: 76007.8 Isoelectric Point: 6.7189
Chromosome	Chromosome/Scaffold: 2 Start: 67502479 End: 67505892
Description	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

External Links

NCBI Taxonomy

Plaza

CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH100	586	679	6.5e-33
TFDFMAIHGGYFIGNVGPAMDFLWFFLGIFVATLSSLATGEQAKAIMDIVEECWQRPIGEMPLKICYPAMENQIITGCGPKNTRWSYDNKGSWP

Full Sequence
Protein Sequence Length: 679 Download
MARHHRGRWC RGGRQANPWG SGGSGRDEVD SSVAEAGNRN GHDDHSRVAQ SQPADESQAA 60 PSLAEEPAAL LRKEFEAIGI HVFRRGEPVF PPGPGYGGAA GTPCVGRANR FLSRLVDEGL 120 HQYNVTISPE PTTKRAYREV MTKLVSENQH TEFGGRFPAY DGRDSLFTAG ALPFGTKELE 180 VTLSAGCDKM QMDKVAINHA PAISLLQLRM LLAGYPTDIP TQAPQVLETV LGDVLFNERD 240 DIERIPIGPN DRTLGVEAWN GLYQSIRSTR VSLSLIADVY SSILVQPLLL IDFVQKILKI 300 DVDRNLTEPE YDKLLKALRD VQIEVTHRHN KHHKYRIVGL SVKPTIDLSS ESPSGATKTV 360 TDHFRERYIL ELKYKSLPCI NVGSEQKPIY LPIEVCKIVP RQCYQKNLEC SQVSTLKKSA 420 SIQPEPEQSC HQVVDRKHTK CANEFGIEFD DNLTTVDARV LLPPNLKYHD SGSLKAWYPM 480 NGHWNMKDKK VINGAKISNW ACVNFCEVLS KKAIEEFCFK LAEMSRIIGA DFANLKLPIF 540 TARSDEVEHD ICIYGYPIEI QALFFMAMRC ALSWLDFGTN NDIYCTFDFM AIHGGYFIGN 600 VGPAMDFLWF FLGIFVATLS SLATGEQAKA IMDIVEECWQ RPIGEMPLKI CYPAMENQII 660 TGCGPKNTRW SYDNKGSWP 720

Full Sequence

Protein Sequence Length: 679 Download

MARHHRGRWC RGGRQANPWG SGGSGRDEVD SSVAEAGNRN GHDDHSRVAQ SQPADESQAA    60
PSLAEEPAAL LRKEFEAIGI HVFRRGEPVF PPGPGYGGAA GTPCVGRANR FLSRLVDEGL    120
HQYNVTISPE PTTKRAYREV MTKLVSENQH TEFGGRFPAY DGRDSLFTAG ALPFGTKELE    180
VTLSAGCDKM QMDKVAINHA PAISLLQLRM LLAGYPTDIP TQAPQVLETV LGDVLFNERD    240
DIERIPIGPN DRTLGVEAWN GLYQSIRSTR VSLSLIADVY SSILVQPLLL IDFVQKILKI    300
DVDRNLTEPE YDKLLKALRD VQIEVTHRHN KHHKYRIVGL SVKPTIDLSS ESPSGATKTV    360
TDHFRERYIL ELKYKSLPCI NVGSEQKPIY LPIEVCKIVP RQCYQKNLEC SQVSTLKKSA    420
SIQPEPEQSC HQVVDRKHTK CANEFGIEFD DNLTTVDARV LLPPNLKYHD SGSLKAWYPM    480
NGHWNMKDKK VINGAKISNW ACVNFCEVLS KKAIEEFCFK LAEMSRIIGA DFANLKLPIF    540
TARSDEVEHD ICIYGYPIEI QALFFMAMRC ALSWLDFGTN NDIYCTFDFM AIHGGYFIGN    600
VGPAMDFLWF FLGIFVATLS SLATGEQAKA IMDIVEECWQ RPIGEMPLKI CYPAMENQII    660
TGCGPKNTRW SYDNKGSWP                                                 720

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02703	PLN02703	3.0e-31	553	679	185	+ beta-fructofuranosidase
PLN02973	PLN02973	2.0e-44	547	679	191	+ beta-fructofuranosidase
PLN03005	PLN03005	5.0e-46	547	679	191	+ beta-fructofuranosidase
PLN03202	PLN03202	1.0e-46	117	505	452	+ protein argonaute; Provisional
pfam12899	Glyco_hydro_100	2.0e-51	553	679	185	+ Alkaline and neutral invertase. This is a family of bacterial and plant alkaline and neutral invertases, EC:3.2.1.26, previously known as Invertase_neut pfam04853.

Gene Ontology
GO Term	Description
GO:0005515	protein binding

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ACN33340.1	0	23	551	15	562	unknown [Zea mays]
RefSeq	NP_001145806.1	0	22	551	14	562	hypothetical protein LOC100279313 [Zea mays]
RefSeq	XP_002460677.1	0	55	551	171	681	hypothetical protein SORBIDRAFT_02g032980 [Sorghum bicolor]
RefSeq	XP_002462841.1	0	1	679	1	679	hypothetical protein SORBIDRAFT_02g032885 [Sorghum bicolor]
RefSeq	XP_002464162.1	0	21	551	26	567	hypothetical protein SORBIDRAFT_01g013340 [Sorghum bicolor]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	4ei3_A	0	91	529	26	482	A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
PDB	4ei1_A	0	91	529	26	482	A Chain A, Crystal Structure Of Human Argonaute2
PDB	4f3t_A	0	91	529	28	484	A Chain A, Human Argonaute-2 - Mir-20a Complex
PDB	1si3_A	1e-19	282	421	2	147	A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex
PDB	1si2_A	1e-19	282	421	2	147	A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang

Hydropathy

EST Download unfiltered results here

Hit

Length

Start

End

EValue

HO777791

469

104

548

EE158707

247

263

EC897161

243

259

EC902567

239

255

EE188351

227

243

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_073_00008.3	Aquca_073_00008.2	Aquca_073_00008.1	Aquca_086_00036.1	Aquca_004_00040.2
	Aquca_004_00040.1	Aquca_003_00442.1	Aquca_073_00027.1
Arabidopsis lyrata	489803	491170	472504	891210	316170
	489110	474815	896781	896678	920675
	332600
Arabidopsis thaliana	AT4G34860.2	AT4G34860.1	AT4G09510.1	AT1G22650.1	AT1G72000.1
	AT1G35580.2	AT1G35580.1	AT4G09510.2	AT1G35580.3	AT5G22510.1
	AT1G56560.1	AT3G06500.1	AT3G05820.1
Brachypodium distachyon	Bradi3g45530.1	Bradi5g10357.1	Bradi4g24470.1	Bradi3g02560.1	Bradi4g24470.2
	Bradi2g12427.1	Bradi5g09200.1	Bradi3g44770.1	Bradi1g64150.1
Brassica rapa	Bra011567	Bra034661	Bra034659	Bra024527	Bra000681
	Bra016091	Bra034413	Bra036761	Bra002417	Bra038926
	Bra029583	Bra040252
Carica papaya	evm.model.supercontig_37.198	evm.model.supercontig_66.27	evm.model.supercontig_48.185	evm.model.supercontig_19.1
Capsella rubella	Carubv10004468m	Carubv10000493m	Carubv10021707m	Carubv10012014m	Carubv10009286m
	Carubv10000472m	Carubv10020003m	Carubv10013138m	Carubv10015452m	Carubv10000738m
Citrus clementina	Ciclev10030393m	Ciclev10023282m	Ciclev10028002m	Ciclev10030926m	Ciclev10030925m
	Ciclev10004474m	Ciclev10000500m	Ciclev10003220m
Citrus sinensis	orange1.1g035779m	orange1.1g048475m	orange1.1g006338m	orange1.1g006332m	orange1.1g006329m
	orange1.1g006328m	orange1.1g006324m	orange1.1g006488m	orange1.1g005783m	orange1.1g006131m
	orange1.1g015270m	orange1.1g045990m	orange1.1g008699m	orange1.1g013067m	orange1.1g007986m
	orange1.1g008801m	orange1.1g010424m	orange1.1g016169m	orange1.1g035960m
Cucumis sativus	Cucsa.381840.1	Cucsa.079400.1	Cucsa.309020.1	Cucsa.252410.1	Cucsa.090510.1
	Cucsa.252410.2
Eucalyptus grandis	Eucgr.G01751.1	Eucgr.F02588.1	Eucgr.F01661.1	Eucgr.D02386.1	Eucgr.G02704.2
	Eucgr.G02704.1	Eucgr.J00457.3	Eucgr.J00457.2	Eucgr.J00457.1	Eucgr.B03984.1
	Eucgr.H03308.1	Eucgr.H03308.2	Eucgr.G02704.3
Fragaria vesca	mrna07792.1-v1.0-hybrid	mrna08524.1-v1.0-hybrid	mrna07379.1-v1.0-hybrid	mrna18695.1-v1.0-hybrid	mrna05019.1-v1.0-hybrid
	mrna00239.1-v1.0-hybrid	mrna22002.1-v1.0-hybrid.383.643	mrna22002.1-v1.0-hybrid.383.643	mrna22002.1-v1.0-hybrid.156.364	mrna22002.1-v1.0-hybrid.156.364
	mrna26695.1-v1.0-hybrid
Glycine max	Glyma10g35890.4	Glyma10g35890.3	Glyma20g31730.2	Glyma20g31730.1	Glyma12g02690.2
	Glyma04g00750.5	Glyma04g00750.4	Glyma04g00750.3	Glyma04g00750.2	Glyma06g00770.3
	Glyma06g00770.2	Glyma05g31920.2	Glyma05g31920.1	Glyma08g15220.1	Glyma20g22780.1
	Glyma10g28640.1	Glyma17g04160.1	Glyma07g36440.1	Glyma03g38970.2	Glyma19g41500.2
	Glyma17g04160.2	Glyma11g10400.2.237.371	Glyma11g10400.2.237.371
Gossypium raimondii	Gorai.005G252100.2	Gorai.005G252100.1	Gorai.013G139600.2	Gorai.013G139600.1	Gorai.006G130500.3
	Gorai.006G130500.2	Gorai.006G130500.1	Gorai.009G289200.1	Gorai.002G123500.1	Gorai.004G151200.1
	Gorai.007G110200.1	Gorai.006G130500.4	Gorai.009G289200.2	Gorai.006G110700.1	Gorai.011G203600.1
	Gorai.002G145500.6	Gorai.002G145500.5	Gorai.002G145500.4	Gorai.002G145500.3	Gorai.002G145500.2
	Gorai.002G145500.1	Gorai.013G208200.2	Gorai.013G208200.1	Gorai.012G023500.1	Gorai.004G235500.1
	Gorai.007G308100.1	Gorai.013G130600.1	Gorai.006G110700.2	Gorai.011G203600.2	Gorai.006G110700.3
	Gorai.002G145500.7	Gorai.004G235500.2	Gorai.004G235500.4	Gorai.004G235500.3
Linum usitatissimum	Lus10042390	Lus10033144	Lus10026284	Lus10034525	Lus10014824
	Lus10016938	Lus10006078	Lus10019532	Lus10043375	Lus10037817
	Lus10017095	Lus10010900	Lus10031431	Lus10009441.256.528	Lus10009441.256.528
	Lus10009441.88.195	Lus10009441.88.195
Malus domestica	MDP0000163452	MDP0000319075	MDP0000186866	MDP0000849174	MDP0000531557
	MDP0000146680	MDP0000297851	MDP0000652278	MDP0000133399	MDP0000095481
	MDP0000315220	MDP0000275203	MDP0000261740	MDP0000798088	MDP0000133829
	MDP0000291284
Manihot esculenta	cassava4.1_005201m	cassava4.1_004783m	cassava4.1_004474m	cassava4.1_004633m	cassava4.1_022884m
	cassava4.1_003659m	cassava4.1_003155m	cassava4.1_002913m	cassava4.1_021277m	cassava4.1_002971m
	cassava4.1_025660m
Medicago truncatula	Medtr1g096140.1	Medtr1g095970.1	Medtr3g117710.1	Medtr8g092170.1	Medtr1g084610.1
	Medtr3g015100.1
Mimulus guttatus	mgv1a005865m	mgv1a003765m	mgv1a023298m	mgv1a002815m	mgv1a005735m
	mgv1a002478m	mgv1a002839m	mgv1a002360m	mgv1a006717m
Oryza sativa	LOC_Os02g34560.1	LOC_Os04g35280.1	LOC_Os11g07440.3	LOC_Os11g07440.1	LOC_Os02g03320.1
	LOC_Os02g34560.2	LOC_Os11g07440.4	LOC_Os11g07440.2	LOC_Os02g32730.1	LOC_Os01g22900.1
	LOC_Os03g20020.1	LOC_Os04g33490.1	LOC_Os01g22900.3	LOC_Os01g22900.2
Panicum virgatum	Pavirv00040169m	Pavirv00015193m	Pavirv00065954m	Pavirv00063699m	Pavirv00064389m
	Pavirv00045650m	Pavirv00000123m	Pavirv00050023m	Pavirv00060635m	Pavirv00019972m
	Pavirv00039825m	Pavirv00059532m	Pavirv00039824m	Pavirv00017654m	Pavirv00063916m
	Pavirv00053033m.234.378	Pavirv00053033m.234.378
Physcomitrella patens	Pp1s227_41V6.1	Pp1s261_25V6.1	Pp1s32_177V6.1	Pp1s333_36V6.1	Pp1s245_40V6.1
	Pp1s15_44V6.1	Pp1s279_35V6.1	Pp1s313_22V6.1
Phaseolus vulgaris	Phvul.007G091300.1	Phvul.009G000400.1	Phvul.002G266600.1	Phvul.007G203100.1	Phvul.001G224200.1
	Phvul.003G118400.1
Picea abies	MA_7394g0010	MA_10436888g0010	MA_116385g0010	MA_89855g0010	MA_10427675g0010
	MA_10427685g0010	MA_10429278g0010.102.302	MA_10429278g0010.102.302	MA_458344g0010	MA_10425903g0010
	MA_3665942g0010	MA_6692890g0010	MA_10309672g0010	MA_182953g0010	MA_10429278g0010.338.431
	MA_10429278g0010.338.431
Populus trichocarpa	Potri.004G167500.1	Potri.013G110800.1	Potri.019G082000.3	Potri.019G082000.2	Potri.019G082000.1
	Potri.009G129000.1	Potri.005G239400.1	Potri.002G173600.1	Potri.004G186500.1	Potri.010G236100.1
	Potri.008G024100.2	Potri.008G024100.1	Potri.008G101500.3	Potri.008G101500.2	Potri.008G101500.1
	Potri.013G006600.1	Potri.005G010800.2	Potri.005G010800.1	Potri.004G186500.2	Potri.013G006600.2
	Potri.010G236100.2
Prunus persica	ppa004112m	ppa003483m	ppa003670m	ppa025225m	ppa002149m
	ppa002625m	ppa002614m	ppa002847m	ppa002385m	ppa019684m
	ppa014917m	ppa018196m	ppb023165m
Ricinus communis	29728.m000799	29836.m000583	29791.m000546	29766.m000116	29889.m003349
	30128.m008935	29711.m000330.251.521	29711.m000330.251.521	30170.m014184.294.480	30170.m014184.294.480
	30170.m014184.135.293	30170.m014184.135.293	56962.m000055	29711.m000330.112.229	29711.m000330.112.229
	56962.m000054
Setaria italica	Si016798m	Si009717m	Si026182m	Si016786m	Si016890m
	Si016691m	Si000681m	Si034714m	Si009683m
Selaginella moellendorffii	111393	89558	151264	267827	443960
Sorghum bicolor	Sb04g022350.1	Sb04g029440.1	Sb05g004770.1	Sb04g002180.1	Sb03g013420.1
	Sb04g021550.1	Sb01g037120.1
Thellungiella halophila	Thhalv10024783m	Thhalv10028553m	Thhalv10007305m	Thhalv10001814m	Thhalv10019647m
	Thhalv10012973m	Thhalv10020219m	Thhalv10023341m	Thhalv10020291m	Thhalv10017815m
Vitis vinifera	GSVIVT01009904001	GSVIVT01034488001	GSVIVT01027176001	GSVIVT01024105001	GSVIVT01037430001
	GSVIVT01031374001	GSVIVT01034944001	GSVIVT01031267001	GSVIVT01037429001	GSVIVT01034754001
	GSVIVT01034753001

Orthologous Group

Species

Aquilegia coerulea

Arabidopsis lyrata