| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g034680.1 |
| Family | GH33 |
| Protein Properties | Length: 217 Molecular Weight: 24134.5 Isoelectric Point: 5.7564 |
| Chromosome | Chromosome/Scaffold: 2 Start: 69181492 End: 69183057 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH33 | 2 | 199 | 2.3e-23 |
| KRSLDGGVTWSQREQLPPGILGPIKNKPFLLEDGRLLCGSSVESWNSWGAWLEVTKDAGRTWRKYGPICIEGQPLGVIQPVPYRTDNGTIRVLLRSFETI GRVCMADSVDEGVTWSYVHETELPNPNSGIDGVKMKDGRVLLAYNTFSRGTLKIAVSSNDGDSWDEVMTLEDTKGMEFSYPAVIQSLDELIHITYTYN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 217 Download |
| MKRSLDGGVT WSQREQLPPG ILGPIKNKPF LLEDGRLLCG SSVESWNSWG AWLEVTKDAG 60 RTWRKYGPIC IEGQPLGVIQ PVPYRTDNGT IRVLLRSFET IGRVCMADSV DEGVTWSYVH 120 ETELPNPNSG IDGVKMKDGR VLLAYNTFSR GTLKIAVSSN DGDSWDEVMT LEDTKGMEFS 180 YPAVIQSLDE LIHITYTYNR TQVKHVVLQP SAMVKL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.001 | 1 | 168 | 199 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 7.0e-17 | 58 | 210 | 159 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 2.0e-66 | 1 | 194 | 201 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82140.1 | 0 | 1 | 213 | 498 | 684 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEC82140.1 | 0 | 1 | 215 | 209 | 423 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| RefSeq | NP_001059779.1 | 0 | 1 | 215 | 209 | 423 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002460769.1 | 0 | 1 | 215 | 192 | 411 | hypothetical protein SORBIDRAFT_02g034675 [Sorghum bicolor] |
| RefSeq | XP_002460770.1 | 0 | 1 | 216 | 1 | 216 | hypothetical protein SORBIDRAFT_02g034680 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.00009 | 1 | 135 | 450 | 574 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.0001 | 1 | 135 | 461 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.0001 | 1 | 135 | 461 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.0001 | 1 | 135 | 461 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.0001 | 1 | 135 | 461 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| HO308267 | 217 | 1 | 217 | 0 |
| FF595131 | 217 | 1 | 217 | 0 |
| JK588957 | 203 | 15 | 217 | 0 |
| CJ948137 | 211 | 1 | 211 | 0 |
| CJ960179 | 211 | 1 | 211 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |