| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g035460.1 |
| Family | CBM43 |
| Protein Properties | Length: 568 Molecular Weight: 60543.7 Isoelectric Point: 5.1794 |
| Chromosome | Chromosome/Scaffold: 2 Start: 69888244 End: 69890749 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 384 | 464 | 5e-32 |
| WCVANASVGESWLQAALEYACGHGADCSAIQPGAACFEPDTVVAHASYAFNSYYQRNGRSNGTCDFNGAGYIVYQEPAGTC | |||
| CBM43 | 470 | 549 | 4.1e-33 |
| WCVANAEVGDARLQNALDYACGNGADCSAIQPGGQCFQPDTKPSHASYAFNSYYQHKGRASGTCDFSGAASVVYQQPSES | |||
| GH17 | 33 | 370 | 0 |
| LGVSYGRVANDLPDPSSVVKLLGDNGITMVRIYDANSNVLSSLANTGIKVMVMLPNENLADAASSSDKALQWVQNNVAAYYPATNIHGVAVGNEVFNSKP DQNLNLVPAMTNIQKALAQLNLADAIKVTTPIAFNAVAVSWPPSSGAFGDDIAQLVMKPMLQFLQQTGSYLSVNYYPYLTYMAQPDTFNLDYVLGNNPNP GAVDPDTQFKYNSLLDAQRDATYYAMDKLGASYSNMAVHHTEHGAPSGGSLRGGGGGHRRLLQAGGVATIANAQTYINNLMNRVLSGNTGTPHRPNADMN VYIFALFNEDQKGTGAGDVEQHFGLFYPNMQKVYEFDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 568 Download |
| MQHIMAFTRL LVVLLGAAFP LLLLFSPAVA SELGVSYGRV ANDLPDPSSV VKLLGDNGIT 60 MVRIYDANSN VLSSLANTGI KVMVMLPNEN LADAASSSDK ALQWVQNNVA AYYPATNIHG 120 VAVGNEVFNS KPDQNLNLVP AMTNIQKALA QLNLADAIKV TTPIAFNAVA VSWPPSSGAF 180 GDDIAQLVMK PMLQFLQQTG SYLSVNYYPY LTYMAQPDTF NLDYVLGNNP NPGAVDPDTQ 240 FKYNSLLDAQ RDATYYAMDK LGASYSNMAV HHTEHGAPSG GSLRGGGGGH RRLLQAGGVA 300 TIANAQTYIN NLMNRVLSGN TGTPHRPNAD MNVYIFALFN EDQKGTGAGD VEQHFGLFYP 360 NMQKVYEFDF RGGGVPPAPG AESWCVANAS VGESWLQAAL EYACGHGADC SAIQPGAACF 420 EPDTVVAHAS YAFNSYYQRN GRSNGTCDFN GAGYIVYQEP AGTCDPNASW CVANAEVGDA 480 RLQNALDYAC GNGADCSAIQ PGGQCFQPDT KPSHASYAFN SYYQHKGRAS GTCDFSGAAS 540 VVYQQPSEST GFLTRRHFLS PCPQTFV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-23 | 383 | 454 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| pfam07983 | X8 | 1.0e-24 | 469 | 540 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-37 | 383 | 464 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| smart00768 | X8 | 5.0e-38 | 469 | 550 | 82 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-79 | 33 | 370 | 338 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001151472.1 | 0 | 5 | 547 | 1 | 555 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| RefSeq | XP_002462968.1 | 0 | 25 | 547 | 21 | 556 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
| RefSeq | XP_002462970.1 | 0 | 32 | 547 | 24 | 565 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
| RefSeq | XP_002462970.1 | 0 | 378 | 556 | 482 | 660 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
| RefSeq | XP_002462970.1 | 4e-32 | 467 | 549 | 397 | 479 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 33 | 370 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 33 | 370 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 33 | 370 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 33 | 370 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 0 | 32 | 370 | 1 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
