| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g035480.1 |
| Family | CBM43 |
| Protein Properties | Length: 501 Molecular Weight: 53038.5 Isoelectric Point: 6.1881 |
| Chromosome | Chromosome/Scaffold: 2 Start: 69909395 End: 69911130 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 396 | 477 | 4.4e-34 |
| WCVANASVGDARLQAALEYACGHGADCGAIQPGGACFEPDTVVAHASYAFNSYYQRNGRGSGTCDFAGAASVVHHAPKVGHC | |||
| GH17 | 28 | 388 | 0 |
| VGVSYGRLGNHLPDTASTVKLLQKSGITSVRLYDANSKVLKALANTGITVMVMLPNDNLAAAAADPSSARRWVRRNVAAYYPATRIHGVAVGNEVFEEAN KNLTAQLVPAMANVHDALVKLGLDEAVKVSTPIAFTALQASWPPSAGRFRDDVAASVMKPMLDFLERTGSYLTVNAYPFFAYVEEPDKISLDYALGNSNA AGVRDPVTGLVYHSLLDAQLDATYFAMEKLGTSSSSAQEPNFMARKGPRAYVSESGWPSAGRPKPGGRPRPRGGGSGRRCLEEEEAGDEAASVANARAYN NYLINRVLSGDTGTPYRPGADMDVYVFALFNENQKGDGADDIEQHFGLFYPNQTKVYEFDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 501 Download |
| MALSNLVVVL LGTASVLLPF SPADAGVVGV SYGRLGNHLP DTASTVKLLQ KSGITSVRLY 60 DANSKVLKAL ANTGITVMVM LPNDNLAAAA ADPSSARRWV RRNVAAYYPA TRIHGVAVGN 120 EVFEEANKNL TAQLVPAMAN VHDALVKLGL DEAVKVSTPI AFTALQASWP PSAGRFRDDV 180 AASVMKPMLD FLERTGSYLT VNAYPFFAYV EEPDKISLDY ALGNSNAAGV RDPVTGLVYH 240 SLLDAQLDAT YFAMEKLGTS SSSAQEPNFM ARKGPRAYVS ESGWPSAGRP KPGGRPRPRG 300 GGSGRRCLEE EEAGDEAASV ANARAYNNYL INRVLSGDTG TPYRPGADMD VYVFALFNEN 360 QKGDGADDIE QHFGLFYPNQ TKVYEFDFRG GALPSWCVAN ASVGDARLQA ALEYACGHGA 420 DCGAIQPGGA CFEPDTVVAH ASYAFNSYYQ RNGRGSGTCD FAGAASVVHH APKVGHCVLP 480 SNGWVQETTA TAKSEGYTAI * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.001 | 278 | 379 | 102 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 4.0e-27 | 395 | 466 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-41 | 395 | 478 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-92 | 28 | 388 | 361 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001151472.1 | 0 | 1 | 484 | 1 | 478 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| RefSeq | NP_001151472.1 | 0 | 395 | 497 | 477 | 579 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| RefSeq | XP_002462967.1 | 0 | 1 | 500 | 1 | 500 | hypothetical protein SORBIDRAFT_02g035480 [Sorghum bicolor] |
| RefSeq | XP_002462968.1 | 0 | 20 | 485 | 21 | 480 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
| RefSeq | XP_002462968.1 | 4e-39 | 395 | 500 | 478 | 581 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 28 | 388 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 28 | 388 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 28 | 388 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 28 | 388 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 28 | 388 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
