| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g035490.1 |
| Family | CBM43 |
| Protein Properties | Length: 582 Molecular Weight: 62140.8 Isoelectric Point: 4.9942 |
| Chromosome | Chromosome/Scaffold: 2 Start: 69920973 End: 69923367 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 479 | 560 | 3.1e-31 |
| WCVANAAVGDARLLDGLNYACANGADCSTIQPGAPCFEPNTMVAHASHAFNSYYQRNRRASGTCDFAGAASVVYRAPKYGNC | |||
| CBM43 | 393 | 473 | 2.1e-32 |
| WCVANASVGESWLQAALEYACGHGADCSAIQPGATCFEPDTVVAHASYAFNSYYQRNGRSNGTCDFNGAGYIVYQEPAGTC | |||
| GH17 | 29 | 379 | 0 |
| VGVNYGRVANDLPDPAAVVQLLRDNGITMVRIYDTDDAVLRSFANTGIKLMVMLPNENLADAARSPSYAADWARRRVAAYLPATRIHAVSVGNEVFDSRP DLTPLLVPAMTNVHAALAQLGLADAIKVSTPLSFAAVAVSWPPSAGRFRDDIAQPVMRPMLEFLQRTGSYLTINLYPYFAYAAQPDKISRDYFLGNPNPG VRDPDTGLMYYSVLDAQRDATFSAMDKLGFTSLQAIPGETGSASAGRPKPGPRHNKPLHQPSWELAVGDDGDGVRVDPPAASKANAQAYNNNVINRVLAG RTGTPLRPDADMDVYIFALFNENQKGSGPDDIEANFGLFYPNMEKVYEFDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 582 Download |
| MALTRLLVLL LGAAALPVLL FRTAEAREVG VNYGRVANDL PDPAAVVQLL RDNGITMVRI 60 YDTDDAVLRS FANTGIKLMV MLPNENLADA ARSPSYAADW ARRRVAAYLP ATRIHAVSVG 120 NEVFDSRPDL TPLLVPAMTN VHAALAQLGL ADAIKVSTPL SFAAVAVSWP PSAGRFRDDI 180 AQPVMRPMLE FLQRTGSYLT INLYPYFAYA AQPDKISRDY FLGNPNPGVR DPDTGLMYYS 240 VLDAQRDATF SAMDKLGFTS LQAIPGETGS ASAGRPKPGP RHNKPLHQPS WELAVGDDGD 300 GVRVDPPAAS KANAQAYNNN VINRVLAGRT GTPLRPDADM DVYIFALFNE NQKGSGPDDI 360 EANFGLFYPN MEKVYEFDFR GGGVPPAPGA ESWCVANASV GESWLQAALE YACGHGADCS 420 AIQPGATCFE PDTVVAHASY AFNSYYQRNG RSNGTCDFNG AGYIVYQEPA GTCDPNASWC 480 VANAAVGDAR LLDGLNYACA NGADCSTIQP GAPCFEPNTM VAHASHAFNS YYQRNRRASG 540 TCDFAGAASV VYRAPKYGNC VLPSKASIEE TIAKSEGEAA I* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 7.0e-22 | 478 | 549 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| pfam07983 | X8 | 1.0e-25 | 392 | 463 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-37 | 478 | 561 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| smart00768 | X8 | 3.0e-39 | 392 | 473 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-87 | 29 | 379 | 351 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82195.1 | 0 | 1 | 578 | 1 | 564 | hypothetical protein OsI_26335 [Oryza sativa Indica Group] |
| RefSeq | NP_001151472.1 | 0 | 1 | 577 | 1 | 578 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| RefSeq | XP_002462968.1 | 0 | 1 | 581 | 1 | 581 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
| RefSeq | XP_002462970.1 | 0 | 28 | 555 | 24 | 564 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
| RefSeq | XP_002462970.1 | 0 | 387 | 566 | 482 | 661 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 29 | 379 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 29 | 379 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 29 | 379 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 29 | 379 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 0 | 28 | 379 | 1 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
