| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g035520.1 |
| Family | CBM43 |
| Protein Properties | Length: 662 Molecular Weight: 69376.9 Isoelectric Point: 4.8265 |
| Chromosome | Chromosome/Scaffold: 2 Start: 69941726 End: 69944230 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 488 | 568 | 1.9e-31 |
| WCVANTAVGDARLQAALDYACGHGADCGAIQPGATCFAPDTKAAHASYAFNDYYQRKGRASGTCDFAGAASVVYQQPAGAC | |||
| CBM43 | 400 | 480 | 1.6e-31 |
| WCVANAAVGDSRLQTALDYACGHGADCSAIQPGAACYEPNTKLAHASYAFNDYYQKNGRASGTCDFAGAANVVYQAPADTC | |||
| CBM43 | 574 | 655 | 2.8e-32 |
| WCVANAAVGDARLQAALDYACGHGADCSAIQPGATCFQPDTKAAHASHAFNSYYQRNGRASGTCDFAGAASVVYQAPKIGNC | |||
| GH17 | 25 | 387 | 0 |
| VGVNYGRVAYDLPDPASVVQLLKQNGITMVRLYDANPKVLASLANTGIKVLVMLPNEELAAAASDPSYALRWARSNVAAFYPATRIHGVSVGNEVFDSRP DLNADLVAAMTNVHDALAQLGLADAVKVSTPVAFSAVTDSYPPSSGRFRDDIAQSVMKPMLGFLERTGSYLTINIYPYLAYAEHPDQISLDYALGNSNPG VRVDDDDDDTAGLTLDDDDDNDGGGVTYYSLLDAQLDATYYAMDDLGFTSLKAHVGETGHPSAGKPKTGRRPPRGGRRHLMAGDDDGDGYPVASVANAHA YVNNVINRVLSGKTGTPHRPDADMDVYIFALFNENQKGDGPDDIEQNFGLFYPNEQKVYEFDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 662 Download |
| MALAHFLGAA LPLLLLRAAE AAGEVGVNYG RVAYDLPDPA SVVQLLKQNG ITMVRLYDAN 60 PKVLASLANT GIKVLVMLPN EELAAAASDP SYALRWARSN VAAFYPATRI HGVSVGNEVF 120 DSRPDLNADL VAAMTNVHDA LAQLGLADAV KVSTPVAFSA VTDSYPPSSG RFRDDIAQSV 180 MKPMLGFLER TGSYLTINIY PYLAYAEHPD QISLDYALGN SNPGVRVDDD DDDTAGLTLD 240 DDDDNDGGGV TYYSLLDAQL DATYYAMDDL GFTSLKAHVG ETGHPSAGKP KTGRRPPRGG 300 RRHLMAGDDD GDGYPVASVA NAHAYVNNVI NRVLSGKTGT PHRPDADMDV YIFALFNENQ 360 KGDGPDDIEQ NFGLFYPNEQ KVYEFDFHGG GGGGGAKASW CVANAAVGDS RLQTALDYAC 420 GHGADCSAIQ PGAACYEPNT KLAHASYAFN DYYQKNGRAS GTCDFAGAAN VVYQAPADTC 480 NAAKAMSWCV ANTAVGDARL QAALDYACGH GADCGAIQPG ATCFAPDTKA AHASYAFNDY 540 YQRKGRASGT CDFAGAASVV YQQPAGACDA KSSWCVANAA VGDARLQAAL DYACGHGADC 600 SAIQPGATCF QPDTKAAHAS HAFNSYYQRN GRASGTCDFA GAASVVYQAP KIGNCMLPSR 660 A* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 4.0e-24 | 399 | 469 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-35 | 487 | 568 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| smart00768 | X8 | 1.0e-35 | 399 | 482 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| smart00768 | X8 | 6.0e-37 | 573 | 655 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-92 | 25 | 387 | 363 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001151472.1 | 0 | 6 | 564 | 10 | 554 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| RefSeq | NP_001151472.1 | 0 | 487 | 661 | 391 | 566 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| RefSeq | XP_002462968.1 | 0 | 16 | 564 | 21 | 555 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
| RefSeq | XP_002462968.1 | 0 | 482 | 661 | 387 | 566 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
| RefSeq | XP_002462970.1 | 0 | 1 | 661 | 1 | 661 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 25 | 387 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 24 | 387 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 24 | 387 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 24 | 387 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 24 | 387 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
