y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb02g035590.1 |
Family | GH14 |
Protein Properties | Length: 605 Molecular Weight: 66283.6 Isoelectric Point: 4.4246 |
Chromosome | Chromosome/Scaffold: 2 Start: 69981839 End: 69984625 |
Description | beta-amylase 5 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 93 | 521 | 0 |
YVMLPLEVVTTENEVEDSGELRAQLRRLREAGVDGVMVDVWWGIVEGAGPGLYEWRAYRELFRIVQAQGLKLQAIMSFHACGGNVGDAVNIPIPRWVREV GEADPDVFYTSSTGARNQEYLTIGVDDEPLFYGRTAIQLYADFMKSFRENMADFLESGLIVDIEVGLGPAGELRYPSYPETQGWVFPGIGQFQCYDKYLE ADFKAAAAEAGHPEWELPDDAGEMNDTPEDTGFFAAERGTYLTEQGRFFLTWYSSKLIQHGDRVLDEANKAFLGCKVKLAAKVSGIHWWYRHPSHAAELA AGYYNLGGRDGYAPVARMLARHGGAILNFTCAEMRDSEQPEEALSAPEQLVQQVLCAGWREGIDVACENALSRYDRRGYNQMLLTARPNGVVGLSGDGAG AGAAPRRVAAVTYLRLSDELLASNNFRIF |
Full Sequence |
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Protein Sequence Length: 605 Download |
MLTASPPSQV KPQQWATCRI SVASSAAFLP PPPAAAGRSV VPVEFRRTTT VASAALGPVS 60 TEPAERSPAP QPPPQSSDDD DEETMLGNYV PVYVMLPLEV VTTENEVEDS GELRAQLRRL 120 REAGVDGVMV DVWWGIVEGA GPGLYEWRAY RELFRIVQAQ GLKLQAIMSF HACGGNVGDA 180 VNIPIPRWVR EVGEADPDVF YTSSTGARNQ EYLTIGVDDE PLFYGRTAIQ LYADFMKSFR 240 ENMADFLESG LIVDIEVGLG PAGELRYPSY PETQGWVFPG IGQFQCYDKY LEADFKAAAA 300 EAGHPEWELP DDAGEMNDTP EDTGFFAAER GTYLTEQGRF FLTWYSSKLI QHGDRVLDEA 360 NKAFLGCKVK LAAKVSGIHW WYRHPSHAAE LAAGYYNLGG RDGYAPVARM LARHGGAILN 420 FTCAEMRDSE QPEEALSAPE QLVQQVLCAG WREGIDVACE NALSRYDRRG YNQMLLTARP 480 NGVVGLSGDG AGAGAAPRRV AAVTYLRLSD ELLASNNFRI FRTFVRKLHA DLDLCADPDR 540 YGRPIKPLET SAPEMSIERL LEATAPAPAP APAFPFDPET DMSVGGWLAE AVDWVLDKIE 600 WVFG* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 2.0e-115 | 87 | 480 | 396 | + beta-amylase | ||
PLN02905 | PLN02905 | 2.0e-139 | 89 | 531 | 447 | + beta-amylase | ||
PLN00197 | PLN00197 | 1.0e-140 | 87 | 528 | 445 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 3.0e-154 | 90 | 528 | 442 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 84 | 604 | 521 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28226.1 | 0 | 1 | 604 | 1 | 595 | unknown [Zea mays] |
EMBL | CAA76131.1 | 0 | 1 | 604 | 11 | 598 | beta-amylase [Triticum aestivum] |
GenBank | EEC82222.1 | 0 | 1 | 603 | 33 | 631 | hypothetical protein OsI_26370 [Oryza sativa Indica Group] |
RefSeq | NP_001059906.1 | 0 | 85 | 603 | 87 | 599 | Os07g0543100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002460819.1 | 0 | 1 | 604 | 1 | 604 | hypothetical protein SORBIDRAFT_02g035590 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 82 | 586 | 4 | 495 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1q6c_A | 0 | 82 | 586 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 82 | 586 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1v3i_A | 0 | 82 | 586 | 4 | 495 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1v3h_A | 0 | 82 | 586 | 4 | 495 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777976 | 424 | 138 | 561 | 0 |
HO803971 | 394 | 168 | 561 | 0 |
HO782669 | 377 | 185 | 561 | 0 |
GT625519 | 286 | 167 | 452 | 0 |
CJ674874 | 270 | 145 | 414 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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