| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g037380.1 |
| Family | CBM43 |
| Protein Properties | Length: 495 Molecular Weight: 52702.5 Isoelectric Point: 6.1098 |
| Chromosome | Chromosome/Scaffold: 2 Start: 71683548 End: 71685922 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 364 | 445 | 2.3e-29 |
| CVANSSAPHSALKHSLDWACGPGSANCSAIQPGQPCYASDDIVAVSSYAFNDYYHRTQSSGGTCNFNGTAMITSTDPSHGSC | |||
| GH17 | 25 | 346 | 0 |
| VGITIGNDMSNMPPATDIVSILKAKKTQHVRLLDSDHQMLTALANTGIEVMVGVPNDQLLRVGQSRSTAADWINKNVAAYTPATNITYIAVGNEVLTTIP NAALVLVPALQFLQSALLAANLNTQVKISSPHSMDVISKAFPPSAATFNSTWSSIMSQYLEFLKNTGSSFMLNAQPYYGYVGGQGVFPLEYALFRSLNPN SQISDPNTNLFYTNMFDAIIDATYNSIQAMNFTGIPVLVTASGWPWRGGPSEKAATVDNALAYNTNLIHHVLNNSGTPSQPNNQSSTYIFELFNEDNRSG PVSEQNWGIMFPNATTIYSLSF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 495 Download |
| MSSKRLHGVF TLLMLMVFNV SGAFVGITIG NDMSNMPPAT DIVSILKAKK TQHVRLLDSD 60 HQMLTALANT GIEVMVGVPN DQLLRVGQSR STAADWINKN VAAYTPATNI TYIAVGNEVL 120 TTIPNAALVL VPALQFLQSA LLAANLNTQV KISSPHSMDV ISKAFPPSAA TFNSTWSSIM 180 SQYLEFLKNT GSSFMLNAQP YYGYVGGQGV FPLEYALFRS LNPNSQISDP NTNLFYTNMF 240 DAIIDATYNS IQAMNFTGIP VLVTASGWPW RGGPSEKAAT VDNALAYNTN LIHHVLNNSG 300 TPSQPNNQSS TYIFELFNED NRSGPVSEQN WGIMFPNATT IYSLSFEDVA TTIPESPALR 360 GVFCVANSSA PHSALKHSLD WACGPGSANC SAIQPGQPCY ASDDIVAVSS YAFNDYYHRT 420 QSSGGTCNFN GTAMITSTDP SHGSCIFAGS TGASGSKGGT ASGPASPDSF ASKSQSCWLI 480 HLVATLLPIL FVVM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.008 | 251 | 334 | 88 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 4.0e-15 | 364 | 434 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-34 | 363 | 447 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 7.0e-72 | 25 | 346 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87545.1 | 0 | 63 | 494 | 1 | 432 | unknown [Zea mays] |
| GenBank | EEE67465.1 | 0 | 19 | 490 | 82 | 552 | hypothetical protein OsJ_24859 [Oryza sativa Japonica Group] |
| RefSeq | NP_001131285.1 | 0 | 1 | 494 | 1 | 492 | hypothetical protein LOC100192598 [Zea mays] |
| RefSeq | NP_001149308.1 | 0 | 1 | 494 | 1 | 494 | glucan endo-1,3-beta-glucosidase 4 [Zea mays] |
| RefSeq | XP_002460914.1 | 0 | 1 | 494 | 1 | 494 | hypothetical protein SORBIDRAFT_02g037380 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 25 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 25 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 25 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 25 | 346 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 25 | 346 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
