| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g038910.1 |
| Family | CE8 |
| Protein Properties | Length: 315 Molecular Weight: 33239.6 Isoelectric Point: 8.7585 |
| Chromosome | Chromosome/Scaffold: 2 Start: 73081469 End: 73083691 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 64 | 308 | 0 |
| IVVSQDGTGHSRTVQGAVDMVPAGNRRRVKILVRPGVYREKVTVPITKPFVSLIGMGSGRTVITWNARASDIDHRSGHQVGTFYSASVAVEADYFCASHI TFENSAPAAPPGAVGQQAVALRLSGDKTMLYRCRILGTQDTLFDNIGRHFLYNCEIQGSIDFIFGNARSLYQGCTLHAVATSYGAIAASQRSSPAEDSGF SFVGCRLTGSGMLYLGRAWGRYARVVYSYCDLSGIVVPQGWSDWG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 315 Download |
| MYILLLLPVV VLASSASSAA TADGSFITWD DLSIPTAAAV QAGGVGGGGV KAAARGGSHD 60 LDTIVVSQDG TGHSRTVQGA VDMVPAGNRR RVKILVRPGV YREKVTVPIT KPFVSLIGMG 120 SGRTVITWNA RASDIDHRSG HQVGTFYSAS VAVEADYFCA SHITFENSAP AAPPGAVGQQ 180 AVALRLSGDK TMLYRCRILG TQDTLFDNIG RHFLYNCEIQ GSIDFIFGNA RSLYQGCTLH 240 AVATSYGAIA ASQRSSPAED SGFSFVGCRL TGSGMLYLGR AWGRYARVVY SYCDLSGIVV 300 PQGWSDWGDR SRTK* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 1.0e-79 | 64 | 312 | 249 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 1.0e-82 | 64 | 311 | 248 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 8.0e-85 | 63 | 314 | 254 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 1.0e-101 | 63 | 312 | 251 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 4.0e-108 | 64 | 313 | 254 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82420.1 | 0 | 23 | 314 | 30 | 351 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
| GenBank | EEE67559.1 | 0 | 23 | 314 | 30 | 350 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060235.1 | 0 | 23 | 314 | 30 | 324 | Os07g0607400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002463165.1 | 0 | 1 | 314 | 1 | 314 | hypothetical protein SORBIDRAFT_02g038910 [Sorghum bicolor] |
| RefSeq | XP_002522727.1 | 0 | 1 | 313 | 35 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2.99878e-43 | 63 | 307 | 8 | 252 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 8e-35 | 65 | 307 | 6 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 3e-16 | 94 | 286 | 63 | 281 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 0.00000000000005 | 75 | 239 | 19 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.00000000000005 | 75 | 239 | 19 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
