| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g040690.1 |
| Family | AA2 |
| Protein Properties | Length: 485 Molecular Weight: 51209.5 Isoelectric Point: 7.3748 |
| Chromosome | Chromosome/Scaffold: 2 Start: 74589797 End: 74596348 |
| Description | Peroxidase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA2 | 192 | 379 | 1.30321e-43 |
| KAGLIRLFFHDCFIRGCDASVLLDPTSTNQQPEKLGIPNFPSLRGYEVIDAAKDELEKACPGKVSCADIVAFAARDASYFLSGGRISFDMPAGRYDGNVS LASETLPNLPPPFAGFDQLEKMFADKGLDAFDMVTLSGAHSIGRSHCSSFSRDRLPPSSTSDMDTAFAAKLQASCASANGTDDNTVMQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MMIAAKLAVV AVLALLGSAS CRQAGFGNGN GARGGITQPP NHPPAPATTP KPKPPASLDR 60 PASPHPHPQP PSYPPATLQQ PTYSPKTSPS PPPPPPTPTY PPTSQGPPVT TPAYPPTSSS 120 PPPPTVTPTY PPSSPSPPPP TPPPPPPSRP PPSSADAGKK LKVGYYENKC NRSVDVEAIV 180 RKHVSGFDDG TKAGLIRLFF HDCFIRGCDA SVLLDPTSTN QQPEKLGIPN FPSLRGYEVI 240 DAAKDELEKA CPGKVSCADI VAFAARDASY FLSGGRISFD MPAGRYDGNV SLASETLPNL 300 PPPFAGFDQL EKMFADKGLD AFDMVTLSGA HSIGRSHCSS FSRDRLPPSS TSDMDTAFAA 360 KLQASCASAN GTDDNTVMQD YKTPDDLPER AGSQGSLHVG RCAHLGRHGE QPGACLRDLS 420 MVVGGQVRGS HGEDGPHRDQ DGHRRGNQEE VPRGQQQTMI RLPVVLPIHQ TLTTPHMMEN 480 NYSN* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00692 | ligninase | 1.0e-6 | 254 | 358 | 109 | + Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
| cd00314 | plant_peroxidase_like | 1.0e-13 | 193 | 387 | 212 | + Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised of classic extracellular plant peroxidases, like horseradish peroxidase. | ||
| pfam00141 | peroxidase | 5.0e-51 | 176 | 333 | 160 | + Peroxidase. | ||
| PLN03030 | PLN03030 | 2.0e-51 | 158 | 366 | 217 | + cationic peroxidase; Provisional | ||
| cd00693 | secretory_peroxidase | 6.0e-99 | 160 | 385 | 234 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001150701.1 | 0 | 161 | 390 | 46 | 276 | LOC100284334 [Zea mays] |
| RefSeq | XP_002461099.1 | 0 | 161 | 390 | 116 | 341 | hypothetical protein SORBIDRAFT_02g040660 [Sorghum bicolor] |
| RefSeq | XP_002463255.1 | 0 | 158 | 390 | 62 | 295 | hypothetical protein SORBIDRAFT_02g040670 [Sorghum bicolor] |
| RefSeq | XP_002463256.1 | 0 | 157 | 390 | 57 | 291 | hypothetical protein SORBIDRAFT_02g040680 [Sorghum bicolor] |
| RefSeq | XP_002463257.1 | 0 | 1 | 484 | 1 | 484 | hypothetical protein SORBIDRAFT_02g040690 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3hdl_A | 0 | 161 | 366 | 2 | 208 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 1sch_B | 2.00386e-43 | 160 | 387 | 1 | 221 | A Chain A, Peanut Peroxidase |
| PDB | 1sch_A | 2.00386e-43 | 160 | 387 | 1 | 221 | A Chain A, Peanut Peroxidase |
| PDB | 1fhf_C | 4e-39 | 193 | 390 | 34 | 231 | A Chain A, The Structure Of Soybean Peroxidase |
| PDB | 1fhf_B | 4e-39 | 193 | 390 | 34 | 231 | A Chain A, The Structure Of Soybean Peroxidase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| betanidin degradation | RXN-8635 | EC-1.11.1.7 | peroxidase |
