| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g041430.1 |
| Family | CE8 |
| Protein Properties | Length: 366 Molecular Weight: 39203 Isoelectric Point: 4.8889 |
| Chromosome | Chromosome/Scaffold: 2 Start: 75260495 End: 75262042 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 51 | 357 | 0 |
| ITVDCHGRGDVRTVQSAVDSVPDGNRDWIKIHVMAGSYWEKVSIPKQKGYILLEGDGSSTTDISFDAHAHAGIDDIMGRPNLTVDEQSPTFQSATFTVLA DNFVARGIAFKNTYRAPDDQLSKENQAVAALVGGDKSAFYGCEFQGFQDTLCDYQGRHYFRGCQVRGAVDFVFGFGQSIYEDCALVSDMPPGPQPGWVTA HARGAAGSPGGLVFKGGAVQAAGGGGQTYLGRAWNAFAAVVFYRTRMDGVVVPQGWQAWNAAGNVSSVTFAEVECTGPGSEMGRRVDWEKRLSEDEVQRF VDIKFID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 366 Download |
| MQQASACFSS TTSSSLLVMP VVALVMVVPL LLGLLSTTPS LAWAAPVSRT ITVDCHGRGD 60 VRTVQSAVDS VPDGNRDWIK IHVMAGSYWE KVSIPKQKGY ILLEGDGSST TDISFDAHAH 120 AGIDDIMGRP NLTVDEQSPT FQSATFTVLA DNFVARGIAF KNTYRAPDDQ LSKENQAVAA 180 LVGGDKSAFY GCEFQGFQDT LCDYQGRHYF RGCQVRGAVD FVFGFGQSIY EDCALVSDMP 240 PGPQPGWVTA HARGAAGSPG GLVFKGGAVQ AAGGGGQTYL GRAWNAFAAV VFYRTRMDGV 300 VVPQGWQAWN AAGNVSSVTF AEVECTGPGS EMGRRVDWEK RLSEDEVQRF VDIKFIDDGW 360 LSNQP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02682 | PLN02682 | 2.0e-74 | 47 | 363 | 323 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 3.0e-78 | 49 | 361 | 316 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 4.0e-81 | 49 | 361 | 316 | + Probable pectinesterase | ||
| PLN02176 | PLN02176 | 1.0e-88 | 44 | 365 | 326 | + putative pectinesterase | ||
| PLN02497 | PLN02497 | 5.0e-98 | 48 | 365 | 326 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC20793.1 | 0 | 48 | 311 | 32 | 292 | pectin methylesterase-like protein [Oryza sativa Japonica Group] |
| GenBank | EAZ04973.1 | 0 | 48 | 294 | 34 | 277 | hypothetical protein OsI_27154 [Oryza sativa Indica Group] |
| GenBank | EEC82597.1 | 0 | 48 | 311 | 34 | 294 | hypothetical protein OsI_27157 [Oryza sativa Indica Group] |
| GenBank | EEE67729.1 | 0 | 48 | 365 | 32 | 345 | hypothetical protein OsJ_25409 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060498.1 | 0 | 48 | 311 | 45 | 305 | Os07g0655600 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 5.99756e-43 | 44 | 361 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-34 | 57 | 338 | 11 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-19 | 19 | 351 | 4 | 353 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 5e-16 | 62 | 365 | 19 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 5e-16 | 62 | 365 | 19 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
