| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb02g042220.1 |
| Family | GH14 |
| Protein Properties | Length: 532 Molecular Weight: 57833.1 Isoelectric Point: 7.2053 |
| Chromosome | Chromosome/Scaffold: 2 Start: 75926839 End: 75928531 |
| Description | beta-amylase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 81 | 493 | 0 |
| FVGLPIDSVTDGATVNSATAIAAGIRAVRLLGADGVELPVFWSVAQPESPDRFSWAGYKAVADMVRAEGLSLRVSLRTHGTPGAGVPTLPSWVSRVAADD PDIFFTDRSGGRHEGCLSFAIDELPVLHGKSPLQLYEAFFRSFAVAFDDFFDSTITDVTVGLGAHGVLRYPSYPPGSDARKFTGMGEFQCYDKYMLQQLR QHAKEEGQAMWGLAGPHDAPRYHDSPDSCGFFRERGGSWETPYGDFFLSWYAGQLVGHGDRVLGTANAVFGGKPVELSAKIPFMHWWHGARSRPAEAAAG FYKSNKKNGYSPVAKMFARHGCTMVVPGMDVCMNKQHHSTGSSPDTLLVQMKNACRRHGARIAGENASLVMTHTSSFSRIRSNILTTELMRPCHFTYQRM GAEFFSPDHFPQF | |||
| Full Sequence |
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| Protein Sequence Length: 532 Download |
| METVPARMTT QMASATHRPQ STRGAGAARA PNRVAFPPAR HGGCSVSRDL RAAGLVGRFF 60 GAGEHSSQSH EVDDLAPARL FVGLPIDSVT DGATVNSATA IAAGIRAVRL LGADGVELPV 120 FWSVAQPESP DRFSWAGYKA VADMVRAEGL SLRVSLRTHG TPGAGVPTLP SWVSRVAADD 180 PDIFFTDRSG GRHEGCLSFA IDELPVLHGK SPLQLYEAFF RSFAVAFDDF FDSTITDVTV 240 GLGAHGVLRY PSYPPGSDAR KFTGMGEFQC YDKYMLQQLR QHAKEEGQAM WGLAGPHDAP 300 RYHDSPDSCG FFRERGGSWE TPYGDFFLSW YAGQLVGHGD RVLGTANAVF GGKPVELSAK 360 IPFMHWWHGA RSRPAEAAAG FYKSNKKNGY SPVAKMFARH GCTMVVPGMD VCMNKQHHST 420 GSSPDTLLVQ MKNACRRHGA RIAGENASLV MTHTSSFSRI RSNILTTELM RPCHFTYQRM 480 GAEFFSPDHF PQFMEFVRSV VCGEWDEDDG PTDEERGMAV SVSGPREANT L* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 6.0e-70 | 80 | 498 | 430 | + beta-amylase | ||
| PLN02161 | PLN02161 | 8.0e-79 | 37 | 500 | 481 | + beta-amylase | ||
| PLN02801 | PLN02801 | 7.0e-88 | 80 | 498 | 431 | + beta-amylase | ||
| PLN00197 | PLN00197 | 3.0e-93 | 80 | 498 | 428 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 3.0e-107 | 10 | 500 | 496 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35504.1 | 0 | 1 | 521 | 1 | 520 | unknown [Zea mays] |
| GenBank | ADD91317.1 | 0 | 73 | 523 | 78 | 520 | chloroplast beta-amylase [Musa acuminata AAA Group] |
| GenBank | EAZ05063.1 | 0 | 8 | 513 | 4 | 510 | hypothetical protein OsI_27252 [Oryza sativa Indica Group] |
| RefSeq | NP_001060573.1 | 0 | 8 | 513 | 4 | 510 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002463351.1 | 0 | 1 | 531 | 1 | 531 | hypothetical protein SORBIDRAFT_02g042220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1fa2_A | 0 | 80 | 500 | 15 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
| PDB | 1q6g_A | 0 | 66 | 497 | 2 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 1q6d_A | 0 | 66 | 497 | 2 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| PDB | 1v3h_A | 0 | 66 | 497 | 2 | 438 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1wdr_A | 0 | 66 | 497 | 2 | 438 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO781436 | 397 | 126 | 522 | 0 |
| HO796964 | 382 | 141 | 522 | 0 |
| EB706243 | 220 | 1 | 217 | 0 |
| HO853900 | 361 | 152 | 509 | 0 |
| HO781436 | 67 | 68 | 133 | 0.00000006 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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