y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb03g000270.1 |
Family | CBM43 |
Protein Properties | Length: 124 Molecular Weight: 13302.2 Isoelectric Point: 8.9881 |
Chromosome | Chromosome/Scaffold: 3 Start: 116253 End: 117212 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 40 | 120 | 5.1e-30 |
WCVAKPSASNDILSLNLNYACSQVSCAVIQKGGPCYYPDNLVSRAAVAMNLYYASNGRHPWNCYFNNSALVVQSDPSYGSC |
Full Sequence |
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Protein Sequence Length: 124 Download |
MVSRGARRPS ARLLLLSLGL VLLYFTSVSS VGVAAAQKTW CVAKPSASND ILSLNLNYAC 60 SQVSCAVIQK GGPCYYPDNL VSRAAVAMNL YYASNGRHPW NCYFNNSALV VQSDPSYGSC 120 TYY* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-15 | 39 | 108 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-30 | 39 | 122 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF83843.1 | 0 | 36 | 123 | 29 | 116 | unknown [Zea mays] |
GenBank | ACG31507.1 | 0 | 36 | 123 | 29 | 116 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
GenBank | ACG39487.1 | 0 | 4 | 123 | 2 | 122 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
RefSeq | XP_002446660.1 | 0 | 2 | 123 | 1 | 122 | hypothetical protein SORBIDRAFT_06g020000 [Sorghum bicolor] |
RefSeq | XP_002454863.1 | 0 | 1 | 123 | 1 | 123 | hypothetical protein SORBIDRAFT_03g000270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-24 | 36 | 122 | 9 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |