Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb03g000660.1 |
Family | CE8 |
Protein Properties | Length: 596 Molecular Weight: 62930.7 Isoelectric Point: 6.625 |
Chromosome | Chromosome/Scaffold: 3 Start: 458439 End: 460226 |
Description | pectin methylesterase PCR fragment F |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 284 | 577 | 0 |
DMVVAMDGSGTHQRIGDAVEAAPVRSARRVVIYIKAGVYGENVKVARNKTNLMLVGDGAGQTVVVGRRSVADGLRTFDTATLSVSGDGFMMRDLTVENRA GPREHQAVALLVTADRAVAYRCAVVGYQDTLYAHAQRQLYRECEVAGTVDAVFGNAAAVLQNCTLRARRPLPGQKNTVTAQGRADPNQSTGFSVHACRLV PAPEYPASSTYLGRPWKPYARVVYMMSYVGEHVDAAGWLAWDASAGAPDDTVYYGEYQNYGPGAALEGRVAWPGHRVITMAEEAMEFTVRWFIA |
Full Sequence |
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Protein Sequence Length: 596 Download |
MAHITLGLPE PPPSSSQHGC RRRLLTILVS IVISVALAVA VSLAIYFAVR PAPGDGPSLM 60 ATTEAITRTC GPTLYPALCV SELAALPGAA AARDADLLVP MSLDATRRRV ADALADATEL 120 VAARAPLDRS AGAGGYGISD CLEMLEAAAD LLSRSVAAVT APAAAAAAIA HDDVMTWLSA 180 ALTYHDTCRD GLHEEVDADG KDDGRAVKAQ MLGSLGNLME HLSNSLAIFK AWGAPVVSGG 240 LPVQKRQLLS ARSGHGDLTF PAPSWVKHSD RRLLEVPTGD MVPDMVVAMD GSGTHQRIGD 300 AVEAAPVRSA RRVVIYIKAG VYGENVKVAR NKTNLMLVGD GAGQTVVVGR RSVADGLRTF 360 DTATLSVSGD GFMMRDLTVE NRAGPREHQA VALLVTADRA VAYRCAVVGY QDTLYAHAQR 420 QLYRECEVAG TVDAVFGNAA AVLQNCTLRA RRPLPGQKNT VTAQGRADPN QSTGFSVHAC 480 RLVPAPEYPA SSTYLGRPWK PYARVVYMMS YVGEHVDAAG WLAWDASAGA PDDTVYYGEY 540 QNYGPGAALE GRVAWPGHRV ITMAEEAMEF TVRWFIAGYS WLPATGLPFV GGLTA* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 9.0e-148 | 138 | 593 | 462 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 3.0e-148 | 138 | 593 | 456 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02170 | PLN02170 | 5.0e-149 | 138 | 593 | 460 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 6.0e-168 | 284 | 578 | 299 | + Pectinesterase. | ||
PLN02484 | PLN02484 | 0 | 63 | 594 | 538 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABJ99594.1 | 0 | 3 | 594 | 4 | 579 | pectinesterase inhibitor [Lycoris aurea] |
GenBank | ABJ99595.1 | 0 | 3 | 594 | 4 | 579 | pectinesterase inhibitor [Lycoris aurea] |
DDBJ | BAH90975.1 | 0 | 1 | 594 | 1 | 620 | Os01g0234300 [Oryza sativa Japonica Group] |
GenBank | EEE54187.1 | 0 | 144 | 594 | 1 | 446 | hypothetical protein OsJ_01013 [Oryza sativa Japonica Group] |
RefSeq | XP_002457060.1 | 0 | 1 | 595 | 1 | 595 | hypothetical protein SORBIDRAFT_03g000660 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 283 | 593 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 281 | 593 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-27 | 294 | 571 | 17 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-27 | 294 | 571 | 17 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 5e-27 | 294 | 571 | 17 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |