| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb03g004360.1 |
| Family | GH28 |
| Protein Properties | Length: 412 Molecular Weight: 44897.4 Isoelectric Point: 7.9459 |
| Chromosome | Chromosome/Scaffold: 3 Start: 4644773 End: 4647974 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 396 | 0 |
| QAACSDQARPIMVIPGRRTFLLSEVTFQGPCKSPITIQLDGNIVAPNHIWTTEQTNLLTIHGVDNLTLDGKGEIDGRGAIWWDCYNNKRCHTRPILLAFS LCNDLWVRNIRLKNSADKHMTLFQCNQALIDGVSITAPADSPNTDGITVASSNSTTISNCSIQSGDDCVSILSHTKNITVTHSTCGPGHGISVGSLGKSE RAKVEQIVITNCSFVGTMNGVRIKSWQGGKGYAKGFLFASLNMTEVQYPIVIDQFYCPQGNCPTKPGGVAISDAKFIDIQGTSSEQEAIKLLCSQSVHCH GIYLSNVNLSWVNHTTPTNATILNAHGT | |||
| Full Sequence |
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| Protein Sequence Length: 412 Download |
| MTLLPIQQRF HMILALKRTA VRHAFIMLLV LVWAIRSAQC HQQKYNVVRF HAAADGKTDD 60 SQAFLATWQA ACSDQARPIM VIPGRRTFLL SEVTFQGPCK SPITIQLDGN IVAPNHIWTT 120 EQTNLLTIHG VDNLTLDGKG EIDGRGAIWW DCYNNKRCHT RPILLAFSLC NDLWVRNIRL 180 KNSADKHMTL FQCNQALIDG VSITAPADSP NTDGITVASS NSTTISNCSI QSGDDCVSIL 240 SHTKNITVTH STCGPGHGIS VGSLGKSERA KVEQIVITNC SFVGTMNGVR IKSWQGGKGY 300 AKGFLFASLN MTEVQYPIVI DQFYCPQGNC PTKPGGVAIS DAKFIDIQGT SSEQEAIKLL 360 CSQSVHCHGI YLSNVNLSWV NHTTPTNATI LNAHGTTEGM VIPTIQFSES L* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-82 | 16 | 404 | 394 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-83 | 72 | 378 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-85 | 45 | 403 | 367 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 5.0e-87 | 6 | 385 | 387 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-91 | 47 | 410 | 373 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD68111.1 | 0 | 22 | 408 | 73 | 457 | putative polygalacturonase [Oryza sativa Japonica Group] |
| EMBL | CAN62658.1 | 0 | 10 | 395 | 13 | 421 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36306.1 | 0 | 19 | 395 | 91 | 481 | unnamed protein product [Vitis vinifera] |
| GenBank | EEE53960.1 | 0 | 22 | 295 | 120 | 391 | hypothetical protein OsJ_00563 [Oryza sativa Japonica Group] |
| RefSeq | XP_002457261.1 | 0 | 1 | 411 | 1 | 411 | hypothetical protein SORBIDRAFT_03g004360 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-24 | 69 | 363 | 15 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-24 | 69 | 363 | 15 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-24 | 69 | 363 | 15 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-24 | 69 | 363 | 15 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-24 | 69 | 363 | 15 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV473829 | 266 | 97 | 361 | 0 |
| DV474834 | 260 | 41 | 299 | 0 |
| CJ666707 | 266 | 82 | 345 | 0 |
| CJ559452 | 177 | 233 | 407 | 0 |
| DY281549 | 321 | 44 | 355 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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